as.data.frame.kdetrees

row.names

optional

If given the original list of trees, will convert to
newick and add a column to the output

trees


Converts a kdetrees object to a data.frame suitable for saving as
output. It contains the density estimates for each tree, a Boolean
value indicating if the tree was selected as an outlier, and
optionally the newick string corresponding to the tree.


A non-parametric method for identifying potential
outlying observations in a collection of phylogenetic trees based
on the methods of Owen and Provan (2011). Such discordant trees
may indicate problems with sequence annotation or tree
reconstruction, or they may represent interesting biological
phenomena, such as horizontal gene transfers.

as.data.frame.kdetrees: Convert kdetrees object to data.frame

Description

Usage

Arguments

Value

Examples