as.matrix.multiPhylo

additional options for <code>ape::cophenetic.phylo</code>


Dissimilarity maps convert trees to vectors using tip-to-tip path
lengths. Branch length information may be optionally discarded
(the default), resulting in vectors based solely on tree
topology.


A non-parametric method for identifying potential
outlying observations in a collection of phylogenetic trees based
on the methods of Owen and Provan (2011). Such discordant trees
may indicate problems with sequence annotation or tree
reconstruction, or they may represent interesting biological
phenomena, such as horizontal gene transfers.

as.matrix.multiPhylo: dissimilarity map tree vectorization

Description

Usage

Arguments

Value

Examples