kgp3

Sample, pedigree, and population data for 2,504 samples in the Phase 3 release of the 1000 Genomes Project data.

datasets

Metadata about populations and data about samples from the 1000 Genomes Project, including the 2,504 samples sequenced for the Phase 3 release and the expanded collection of 3,202 samples with 602 additional trios. The data is described in Auton et al. (2015) <doi:10.1038/nature15393> and Byrska-Bishop et al. (2022) <doi:10.1016/j.cell.2022.08.004>, and raw data is available at <http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/>. See Turner (2022) <doi:10.48550/arXiv.2210.00539> for more details.

Stephen Turner

1000 Genomes Project Metadata

kgp3 function

A tibble with 2504 rows and 10 columns:<dl>
 <dt>fid</dt>
<dd>Family ID</dd> <dt>id</dt>
<dd>Individual ID</dd> <dt>pid</dt>
<dd>Paternal ID</dd> <dt>mid</dt>
<dd>Maternal ID</dd> <dt>sex</dt>
<dd>Sex (1=Male, 2=Female)</dd> <dt>sexf</dt>
<dd>Sex as a factor</dd> <dt>pop</dt>
<dd>Short population code</dd> <dt>reg</dt>
<dd>Short region code</dd> <dt>population</dt>
<dd>Long population description</dd> <dt>region</dt>
<dd>Long region description</dd>
</dl>

Format

1000 Genomes Project sample data (Phase 3) — kgp3

A tibble with 2504 rows and 10 columns:<dl>
 <dt>fid</dt>
<dd>Family ID</dd>

 <dt>id</dt>
<dd>Individual ID</dd>

 <dt>pid</dt>
<dd>Paternal ID</dd>

 <dt>mid</dt>
<dd>Maternal ID</dd>

 <dt>sex</dt>
<dd>Sex (1=Male, 2=Female)</dd>

 <dt>sexf</dt>
<dd>Sex as a factor</dd>

 <dt>pop</dt>
<dd>Short population code</dd>

 <dt>reg</dt>
<dd>Short region code</dd>

 <dt>population</dt>
<dd>Long population description</dd>

 <dt>region</dt>
<dd>Long region description</dd>


</dl>

kgp3: 1000 Genomes Project sample data (Phase 3)

Description

Usage

Arguments

Format

References