kgpmeta

Population metadata from 26 populations across five continental regions.

datasets

Metadata about populations and data about samples from the 1000 Genomes Project, including the 2,504 samples sequenced for the Phase 3 release and the expanded collection of 3,202 samples with 602 additional trios. The data is described in Auton et al. (2015) <doi:10.1038/nature15393> and Byrska-Bishop et al. (2022) <doi:10.1016/j.cell.2022.08.004>, and raw data is available at <http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/>. See Turner (2022) <doi:10.48550/arXiv.2210.00539> for more details.

Stephen Turner

1000 Genomes Project Metadata

kgpmeta function

A tibble with 26 rows and 7 columns:<dl>
 <dt>pop</dt>
<dd>Short population code</dd> <dt>reg</dt>
<dd>Short region code</dd> <dt>population</dt>
<dd>Long population description</dd> <dt>region</dt>
<dd>Long region description</dd> <dt>regcolor</dt>
<dd>Color for plotting this region on a map</dd> <dt>lat</dt>
<dd>Population latitude</dd> <dt>lng</dt>
<dd>Population longitude</dd>
</dl>

Format

1000 Genomes Project population metadata — kgpmeta

A tibble with 26 rows and 7 columns:<dl>
 <dt>pop</dt>
<dd>Short population code</dd>

 <dt>reg</dt>
<dd>Short region code</dd>

 <dt>population</dt>
<dd>Long population description</dd>

 <dt>region</dt>
<dd>Long region description</dd>

 <dt>regcolor</dt>
<dd>Color for plotting this region on a map</dd>

 <dt>lat</dt>
<dd>Population latitude</dd>

 <dt>lng</dt>
<dd>Population longitude</dd>


</dl>

kgpmeta: 1000 Genomes Project population metadata

Description

Usage

Arguments

Format

References