GroupProj-class

SortList

SortList,GroupProj-method

SortList<-,GroupProj-method

ProyGroups

ProyGroups,GroupProj-method

ProyGroups<-,GroupProj-method

Groups

Groups,GroupProj-method

Groups<-,GroupProj-method

Class <code>GroupProj</code> GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data
of Multiple dataset)
GroupProj to SelectVar object.

This package allows to work with mixed omics data (transcriptomics, proteomics, microarray-chips, rna-seq data), introducing the following
                 improvements: distance options (for numeric and/or categorical variables) for each of the tables, bootstrap resampling techniques on the
                 residuals matrices for all methods, that enable perform confidence ellipses for the projection of individuals, variables and biplot
                 methodology to project variables (gene expression) on the compromise. Since the main purpose of the package is to use these techniques to
                 omic data analysis, it includes an example data from four different microarray platforms (i.e.,Agilent, Affymetrix HGU 95, Affymetrix HGU
                 133 and Affymetrix HGU 133plus 2.0) on the NCI-60 cell lines.NCI60_4arrays is a list containing the NCI-60 microarray data with only few
                 hundreds of genes randomly selected in each platform to keep the size of the package small. The data are the same that the package omicade4
                 used to implement the co-inertia analysis. The references in packages follow the style of the APA-6th norm.

M L Zingaretti

kimod

A k-tables approach to integrate multiple Omics-Data

GroupProj-class function

<ol><li>It cluster variables for SelectVar from all tables (Studies) in STATIS Methodology.</li></ol>

Features

<ul><li>SortList list the clustering variables</li><li>ProyGroups coords (beta) for Groups representant.</li><li>Groups list of clusters.</li></ul>

Fields

<ul><li><code>SortList(x)</code>,<code>SortList(x) &lt;- value</code>: list the clustering variables</li><li><code>ProyGroups(x)</code>,<code>ProyGroups(x) &lt;- value</code>: coords (beta) for Groups representant.</li><li><code>Groups(x)</code>,<code>Groups(x) &lt;- value</code>:Groups list of clusters.</li></ul>

GroupProj-class: Class `GroupProj` GroupProj S4 class (kimod: k-tables approach to integrate multiple Omics-Data of Multiple dataset) GroupProj to SelectVar object.

Description

Arguments

Features

Fields

Accesors

Examples