NCI60Selec

The 60 human tumour cell lines are derived from patients with leukaemia, melanoma, lung, colon, central nervous system, ovarian, renal, breast and prostate cancers. The cell line panel is widely used in anti-cancer drug screen. In this dataset, a subset of microarray gene expression of the NCI 60 cell lines from four different platforms are combined in a list.

datasets

This package allows to work with mixed omics data (transcriptomics, proteomics, microarray-chips, rna-seq data), introducing the following
                 improvements: distance options (for numeric and/or categorical variables) for each of the tables, bootstrap resampling techniques on the
                 residuals matrices for all methods, that enable perform confidence ellipses for the projection of individuals, variables and biplot
                 methodology to project variables (gene expression) on the compromise. Since the main purpose of the package is to use these techniques to
                 omic data analysis, it includes an example data from four different microarray platforms (i.e.,Agilent, Affymetrix HGU 95, Affymetrix HGU
                 133 and Affymetrix HGU 133plus 2.0) on the NCI-60 cell lines.NCI60_4arrays is a list containing the NCI-60 microarray data with only few
                 hundreds of genes randomly selected in each platform to keep the size of the package small. The data are the same that the package omicade4
                 used to implement the co-inertia analysis. The references in packages follow the style of the APA-6th norm.

M L Zingaretti

kimod

A k-tables approach to integrate multiple Omics-Data

NCI60Selec function

<code>NCI60Selec</code> This data is an list of length 4.

format

Cell Miner http://discover.nci.nih.gov/cellminer/.

NCI60Selec: Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms.

Description

Usage

Arguments

Value

format

source

References

Examples