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kin.cohort (version 0.7)

methods: methods for print and plot

Description

Functions to print a formatted output and produce plots

Usage

"print"(x, descriptive = TRUE, cumrisk = TRUE, hazard = FALSE, survival = FALSE, logrank = TRUE, HR = TRUE, digits = 5, ...)
"print"(x, cumrisk = TRUE, hazard = FALSE, HR = TRUE, conf = 0.95, digits = 5, show = TRUE, logrank = TRUE, ...)
"plot"(x, what = c("cr", "hr", "crr"), min.age = min(x$knots), max.age = max(x$knots), max.y, type, add=FALSE, color, line, ...)
"plot"(x, conf = 0.95, what = c("cr", "hr", "crr"), min.age = min(x$knots), max.age = max(x$knots), age.start = 0, start.ref, max.y, type, median = FALSE, add = FALSE, color, line, ...)

Arguments

x
object to be printed or plotted
descriptive
print table with number of events and person-years
cumrisk
print cumulative risk
hazard
print hazard
survival
print survival
HR
print harard ratios
logrank
print logrank p value
digits
digits for rounding
show
do not print
conf
coverage for confidence intervals
what
type of plot desired: cumulative risk ("cr"), hazard ratio ("hr", for marginal method only), cumulative risk ratio ("crr", for moments method only)
min.age
Minimal age for plots
max.age
Maximal age for plots
age.start
initial age value (x) for plots
start.ref
initial risk value (y) for plots
max.y
Max value for y axis
type
type of line in plots
add
If TRUE, then lines are added to current plot. Useful to compare analyses.
color
change line colors using a vector of values
line
change line width using a vector of values
median
plot median of bootstrap samples instead of point estimates
...
additional arguments for print or plot

Details

Specific output and plot types can be selected with arguments