kinfit v1.1.14

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Routines for Fitting Kinetic Models to Chemical Degradation Data

The FOCUS Kinetics Report first published in 2006 describes mathematical models and recommends statistical methods for the evaluation of chemical degradation data. This package implements fitting the kinetic models suitable for observations of the decline of a single chemical compound (no metabolite formation/decline or multi-compartment kinetics). Please note that no warranty is implied for correctness of results or fitness for a particular purpose. 'kinfit' is maintained, but not actively developed at the moment. Please check the 'mkin' package for an actively developed package for kinetic evaluations of degradation data.

Functions in kinfit

Name Description
FOMC First-Order Multi-Compartment kinetics
FOCUS_2006_FOMC_ref_A_to_F Results of fitting the FOMC model to Datasets A to F of FOCUS (2006)
FOCUS_2006_A Dataset A from the FOCUS Kinetics report from 2006
FOCUS_2006_E Dataset E from the FOCUS Kinetics report from 2006
FOCUS_2006_B Dataset B from the FOCUS Kinetics report from 2006
kinerrmin Calculate the minimum error to assume in order to pass the variance test
FOCUS_2006_SFO_ref_A_to_F Results of fitting the SFO model to Datasets A to F of FOCUS (2006)
FOCUS_2006_F Water sediment study dataset F from the FOCUS Kinetics report from 2006
FOCUS_2006_DFOP_ref_A_to_B Results of fitting the DFOP model to Datasets A to B of FOCUS (2006)
FOCUS_2006_HS_ref_A_to_F Results of fitting the HS model to Datasets A to F of FOCUS (2006)
kinobjects Creates list of objects, each representing a kinetic experiment or trial
HS Hockey-Stick kinetics
FOCUS_2006_D Dataset D from the FOCUS Kinetics report from 2006
kinfit Fit kinetic models to chemical degradation data
kinresults Function to collect useful results for a set of fitted kinetic models
kinobject Creates list representing a kinetic experiment or trial
SFO Single First-Order kinetics
kinplot Creates a plot of the kinetic fits
kinresplot Creates a plot of the residual for specified kinetic fits
DFOP Double First-Order in Parallel kinetics
kinreport Creates a report of the kinetic fits
kinwrite.KinGUI Function to write KinGUI input files from kinetic data
FOCUS_2006_C Dataset C from the FOCUS Kinetics report from 2006
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Vignettes of kinfit

Name
KinGUI/A_DFOP_report.txt
KinGUI/A_DFOP_report_detailed.txt
KinGUI/A_FOMC_report.txt
KinGUI/A_FOMC_report_detailed.txt
KinGUI/A_HS_report.txt
KinGUI/A_HS_report_detailed.txt
KinGUI/A_KinGUI.txt
KinGUI/A_SFO_report.txt
KinGUI/A_SFO_report_detailed.txt
KinGUI/B_DFOP_report.txt
KinGUI/B_DFOP_report_detailed.txt
KinGUI/B_FOMC_report.txt
KinGUI/B_FOMC_report_detailed.txt
KinGUI/B_HS_report.txt
KinGUI/B_HS_report_detailed.txt
KinGUI/B_KinGUI.txt
KinGUI/B_SFO_report.txt
KinGUI/B_SFO_report_detailed.txt
KinGUI/C_DFOP_report.txt
KinGUI/C_DFOP_report_detailed.txt
KinGUI/C_FOMC_report.txt
KinGUI/C_FOMC_report_detailed.txt
KinGUI/C_HS_report.txt
KinGUI/C_HS_report_detailed.txt
KinGUI/C_KinGUI.txt
KinGUI/C_SFO_report.txt
KinGUI/C_SFO_report_detailed.txt
KinGUI/D_DFOP_report.txt
KinGUI/D_DFOP_report_detailed.txt
KinGUI/D_FOMC_report.txt
KinGUI/D_FOMC_report_detailed.txt
KinGUI/D_HS_report.txt
KinGUI/D_HS_report_detailed.txt
KinGUI/D_KinGUI.txt
KinGUI/D_SFO_report.txt
KinGUI/D_SFO_report_detailed.txt
KinGUI/F_system_DFOP_report.txt
KinGUI/F_system_FOMC_report.txt
KinGUI/F_system_HS_report.txt
KinGUI/F_system_KinGUI.txt
KinGUI/F_system_SFO_report.txt
KinGUI/F_water_DFOP_report.txt
KinGUI/F_water_FOMC_report.txt
KinGUI/F_water_HS_report.txt
KinGUI/F_water_KinGUI.txt
KinGUI/F_water_SFO_report.txt
examples.Rnw
header.tex
kinfit.Rnw
references.bib
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Details

Type Package
Date 2015-07-03
License GPL
LazyLoad yes
LazyData yes
URL http://cran.r-project.org, http://kinfit.r-forge.r-project.org
NeedsCompilation no
Packaged 2015-07-03 13:04:38 UTC; jranke
Repository CRAN
Date/Publication 2015-07-04 08:38:42

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