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landsepi (version 0.0.5)

Landscape Epidemiology and Evolution

Description

A spatio-temporal stochastic model to assess resistance deployment strategies against plant pathogens. The model is based on stochastic geometry for describing the landscape and the resistant hosts, a dispersal kernel for the dissemination of the pathogen, and a SEIR (Susceptible-Exposed-Infectious-Removed) architecture to simulate plant response to disease. Loup Rimbaud, Julien Papax, Jean-Franois Rey, Luke G Barrett, Peter H Thrall (2018) .

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Version

Install

install.packages('landsepi')

Monthly Downloads

286

Version

0.0.5

License

GPL (>= 2) | file LICENSE

Maintainer

Jean-Francois Rey

Last Published

November 27th, 2018

Functions in landsepi (0.0.5)

dispP_5

Pathogen dispersal data for testing.
invlogit

Inverse logit function
dispP_3

Pathogen dispersal data for testing.
landscapeTEST1

A landscape for testing
dispP_4

Pathogen dispersal data for testing.
multiN

Allocation of cultivars
landscapeTEST2

A landscape for testing
demo_landsepi

Package demonstration
dispP_1

Pathogen dispersal data for testing.
dispP_2

Pathogen dispersal data for testing.
logit

Logit function
modelLandsEPI

Model Landscape Epidemiology & Evolution
dispH

Host dispersal data for testing.
periodic_cov

Periodic covariance function
landscapeTEST5

A landscape for testing
AgriLand

Landscape generation
landsepi-package

Landscape Epidemiology and Evolution
simul_landsepi

Simulation with provided data
HLIRdynamics

Generation of model outputs
landscapeTEST3

A landscape for testing
landscapeTEST4

A landscape for testing
plotevolQR

Plotting pathotype frequencies
plotland

Plotting the landscape