landsepi (version 1.1.1)

setCroptypes: Set croptypes

Description

Updates a LandsepiParams object with croptypes and their composition with regard to cultivar proportions

Usage

setCroptypes(params, dfCroptypes)

Arguments

params

a LandsepiParams Object.

dfCroptypes

a data.frame containing cultivar proportions in each croptype (see details). It can be generated manually, or initialised with loadCroptypes and later updated with allocateCroptypeCultivars.

Value

a LandsepiParams object

Details

The data.frame for cultivar allocations into croptypes must take this format (example):

croptypeID	croptypeName	cultivarName1	cultivarName2	...
0	"cropt1"	1	0	...
1	"cropt2"	0.5	0.5	...

croptypeIDs have to match values from landscape "croptypeID" layer with feature year_X. Cultivars names have to match cultivar names in the cultivars data.frame.

See Also

loadCroptypes

Examples

# NOT RUN {
simul_params <- createSimulParams()
cultivar1 <- loadCultivar(name = "Susceptible", type = "growingHost")
cultivar2 <- loadCultivar(name = "Resistant1", type = "growingHost")
cultivar3 <- loadCultivar(name = "Resistant2", type = "growingHost")
cultivars <- data.frame(rbind(cultivar1, cultivar2, cultivar3), stringsAsFactors = FALSE)
simul_params <- setCultivars(simul_params, cultivars)
croptypes <- loadCroptypes(simul_params, names = c("Susceptible crop", "Mixture"))
croptypes <- allocateCroptypeCultivars(croptypes, "Susceptible crop", "Susceptible")
croptypes <- allocateCroptypeCultivars(croptypes, "Mixture", c("Resistant1", "Resistant2"))
simul_params <- setCroptypes(simul_params, croptypes)
simul_params@Croptypes
# }