landsepi (version 1.1.2)

allocateCultivarGenes: Allocate genes to a cultivar

Description

Updates a LandsepiParams object with, for a given cultivar, the list of genes it carries

Usage

allocateCultivarGenes(params, cultivarName, listGenesNames = c(""))

Value

a LandsepiParams object

Arguments

params

a LandsepiParams object.

cultivarName

the name of the cultivar to be allocated.

listGenesNames

the names of the genes the cultivar carries

See Also

setGenes, setCultivars

Examples

if (FALSE) {
simul_params <- createSimulParams()
gene1 <- loadGene(name = "MG 1", type = "majorGene")
gene2 <- loadGene(name = "MG 2", type = "majorGene")
genes <- data.frame(rbind(gene1, gene2), stringsAsFactors = FALSE)
simul_params <- setGenes(simul_params, genes)
cultivar1 <- loadCultivar(name = "Susceptible", type = "growingHost")
cultivar2 <- loadCultivar(name = "Resistant", type = "growingHost")
cultivars <- data.frame(rbind(cultivar1, cultivar2), stringsAsFactors = FALSE)
simul_params <- setCultivars(simul_params, cultivars)
simul_params <- allocateCultivarGenes(simul_params, "Resistant", c("MG 1", "MG 2"))
simul_params@CultivarsGenes
}