checkPI0_mat

A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution
of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies.
It is based on a spatial geometry for describing the landscape and allocation of different cultivars,
a dispersal kernel for the dissemination of the pathogen, and a SEIR
('Susceptible-Exposed-Infectious-Removed’) structure with a discrete time step.
It provides a useful tool to assess the performance of a wide range of deployment options with
respect to their epidemiological, evolutionary and economic outcomes.
Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett,
Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.

Jean-Francois Rey

landsepi

Landscape Epidemiology and Evolution

Loup Rimbaud

Marta Zaffaroni

Jean-François Rey

Julien Papaix

Jean-Loup Gaussen

Manon Couty

checkPI0_mat function

<dl><dt>mat</dt>
<dd>a 3D array of dimensions (1:Nhost,1:Npatho,1:Npoly)</dd>
<dt>params</dt>
<dd>a LandsepiParams object.</dd></dl>

Arguments

Check the array PI0_mat when entered manually in loadInoculum(). — checkPI0_mat

<dl>

<dt>mat</dt>
<dd>a 3D array of dimensions (1:Nhost,1:Npatho,1:Npoly)</dd>


<dt>params</dt>
<dd>a LandsepiParams object.</dd>

</dl>

Check the array PI0_mat when entered manually in <code>loadInoculum()</code>.

checkPI0_mat: Check the array PI0_mat when entered manually in `loadInoculum()`.

Description

Usage

Value

Arguments