switch_patho_to_aggr

Finds the level of aggressiveness on different components (targeted by different resistance genes)
from the index of a given pathogen genotype

A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution
of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies.
It is based on a spatial geometry for describing the landscape and allocation of different cultivars,
a dispersal kernel for the dissemination of the pathogen, and a SEIR
('Susceptible-Exposed-Infectious-Removed’) structure with a discrete time step.
It provides a useful tool to assess the performance of a wide range of deployment options with
respect to their epidemiological, evolutionary and economic outcomes.
Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett,
Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.

Jean-Francois Rey

landsepi

Landscape Epidemiology and Evolution

Loup Rimbaud

Marta Zaffaroni

Jean-François Rey

Julien Papaix

Jean-Loup Gaussen

Manon Couty

switch_patho_to_aggr function

<dl><dt>index_patho</dt>
<dd>index of pathogen genotype</dd>
<dt>Ngenes</dt>
<dd>number of resistance genes</dd>
<dt>Nlevels_aggressiveness</dt>
<dd>vector of the number of adaptation levels related to each resistance gene</dd></dl>

Arguments

Switch from index of genotype to indices of agressiveness on different components — switch_patho_to_aggr

<dl>

<dt>index_patho</dt>
<dd>index of pathogen genotype</dd>


<dt>Ngenes</dt>
<dd>number of resistance genes</dd>


<dt>Nlevels_aggressiveness</dt>
<dd>vector of the number of adaptation levels related to each resistance gene</dd>

</dl>

switch_patho_to_aggr: Switch from index of genotype to indices of agressiveness on different components

Description

Usage

Value

Arguments

Examples