pbnorm_dist

Returns distribution of proportional bivariate normal.

Estimate haplotypic or composite pairwise linkage disequilibrium
(LD) in polyploids, using either genotypes or genotype likelihoods.
Support is provided to estimate the popular measures of LD: the LD
coefficient D, the standardized LD coefficient D', and the Pearson
correlation coefficient r. All estimates are returned with corresponding
standard errors. These estimates and standard errors can then be used
for shrinkage estimation. The main functions are ldfast(), ldest(), mldest(),
sldest(), plot.lddf(), format_lddf(), and ldshrink(). Details of the methods
are available in Gerard (2021a) <doi:10.1111/1755-0998.13349>
and Gerard (2021b) <doi:10.1038/s41437-021-00462-5>.

David Gerard

ldsep

Linkage Disequilibrium Shrinkage Estimation for Polyploids

pbnorm_dist function

<dl><dt>mu</dt>
<dd>A vector of length 2 containing the mean.</dd>
<dt>sigma</dt>
<dd>A 2-by-2 positive definite covariance matrix</dd>
<dt>K</dt>
<dd>The ploidy of the individual.</dd>
<dt>log</dt>
<dd>A logical. If <code>TRUE</code>, log probabilities are returned.</dd></dl>

Arguments

Author

Returns distribution of proportional bivariate normal. — pbnorm_dist

<dl>

<dt>mu</dt>
<dd>A vector of length 2 containing the mean.</dd>


<dt>sigma</dt>
<dd>A 2-by-2 positive definite covariance matrix</dd>


<dt>K</dt>
<dd>The ploidy of the individual.</dd>


<dt>log</dt>
<dd>A logical. If <code>TRUE</code>, log probabilities are returned.</dd>

</dl>

pbnorm_dist: Returns distribution of proportional bivariate normal.

Description

Usage

Value

Arguments

Author