lefse (version 0.1)

Phylogenetic and Functional Analyses for Ecology

Description

Utilizing phylogenetic and functional information for the analyses of ecological datasets. The analyses include methods for quantifying the phylogenetic and functional diversity of assemblages.

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Version

Install

install.packages('lefse')

Monthly Downloads

Version

0.1

License

GPL-2 | GPL-3

Maintainer

Nathan G Swenson

Last Published

September 11th, 2014

Functions in lefse (0.1)

Fmntd

Functional NND

lefse.sample

Community data matrix for lefse

com.trait.weighted

Quantifies the moments of the community trait distribution weighted by abundance

Fmntd.a

Functional NND with abundance

com.trait.moments

sntd.a

Functional standard deviation of the NND with abundance weighting

Fmpd.a

Functional MPD with abundance

Fsntd

Functional standard deviation of the NND

Fmpd

Functional MPD no with abundance

lefse.traits

Example trait dataset for lefse

trait.range

Range of trait values in a community