lfproQC (version 1.4.1)

top_table_fn: Creating the top table

Description

Top table can be used for identifying the pairwise differential abundance analysis of proteins in the dataset.

Usage

top_table_fn(data, groups, ch_gr1, ch_gr2)

Value

Top table consists of following values

`logFC` - Log fold change values,

`AveExpr` - Average intensity values,

`t`- t-statistic values,

`P.Value` - P-values,

`adj.P.Val` - Adjusted P-values,

`B`- B-statistic values

Arguments

data

Normalized and missing values imputed expression dataset containing protein information

groups

Group information about the input data

ch_gr1

Group number of the dataset for pairwise comparison with the another group

ch_gr2

Group number of the dataset to be compared with the chosen group

See Also

`limma::topTable`

Examples

# \donttest{
top_table <- top_table_fn(rlr_knn_yeast_data, yeast_groups, 2, 1)
top_table
# }