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lgcp (version 0.9-1)

Log-Gaussian Cox Process

Description

Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process

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Version

Install

install.packages('lgcp')

Monthly Downloads

822

Version

0.9-1

License

GPL-3

Maintainer

Benjamin Taylor

Last Published

December 9th, 2011

Functions in lgcp (0.9-1)

as.SpatialGridDataFrame

as...
as.ppp.stppp

as...
constantInTime.stppp

constantInTime...
expectation

expectation function...
as.owinlist.stapp

as...
lgcpPredictAggregated

lgcpPredictAggregated function...
lgcpgrid.matrix

lgcpgrid...
multiply.list

multiply...
GAupdate.MonteCarloAverage

GAupdate...
normsq

normsq function...
GFreturnvalue

GFreturnvalue function...
affine.fromXYZ

affine...
rotmat

rotmat function...
blockcircbase

blockcircbase function...
diffnorm2

diffnorm2 function...
meanfield.lgcpPredict

meanfield...
constantInTime

constantInTime function...
hvals

hvals function...
affine.fromSPDF

affine...
inversebase

inversebase function...
lgcpPredictSpatial

lgcpPredictSpatial function...
hasNext

generic hasNext method...
print.fromSPDF

print...
nullAverage

nullAverage function...
quantile.lgcpPredict

quantile...
spatialIntensities.fromSPDF

spatialIntensities...
updateAMCMC.andrieuthomsh

updateAMCMC...
GFreturnvalue.nullFunction

GFreturnvalue...
txtProgressBar2

txtProgressBar2
affine.fromFunction

affine...
window.lgcpPredict

window...
GAinitialise

GAinitialise function...
xvals.lgcpPredict

xvals...
as.owinlist.SpatialPolygonsDataFrame

as...
evallogprobY

evallogprobY function...
yvals.default

yvals...
d.func

d...
ginhomAverage

ginhomAverage function...
constanth

constanth function...
GFupdate

GFupdate function...
grad.comp

grad...
computeGradtruncSpatioTemporal

computeGradtruncSpatioTemporal function...
gridfun

gridfun function...
KinhomAverage

KinhomAverage function...
gridav

gridav function...
computeGradtruncSpatial

computeGradtruncSpatial function...
loc2poly

loc2poly function...
eigenfrombase

eigenfrombase function...
initialiseAMCMC.andrieuthomsh

initaliseAMCMC...
showGrid.default

showGrid...
temporalAtRisk.numeric

temporalAtRisk...
mcmctrace.lgcpPredict

mcmctrace...
intens.lgcpPredict

intens...
xvals

xvals function...
intens

intens function...
yvals

yvals function...
zvals.fromXYZ

zvals...
xvals.default

xvals...
smultiply.list

smultiply...
GAupdate

GAupdate function...
circulant.numeric

circulant...
add.list

add...
getRotation

getRotation function...
image.lgcpgrid

image...
lgcppars

lgcppars function...
print.lgcpPredict

print...
resetLoop

reset iterator...
selectObsWindow.stppp

selectObsWindow...
stapp.list

stapp...
spatialAtRisk.SpatialPolygonsDataFrame

spatialAtRisk...
updateAMCMC

updateAMCMC function...
Cvb

Cvb function...
SpatialPolygonsDataFrame.stapp

SpatialPolygonsDataFrame...
as.fromXYZ.fromFunction

as...
as.fromXYZ

as...
as.stppp

as...
GFinitialise.nullFunction

GFinitialise...
mcmcProgressPrint

printing progress monitor...
constantInTime.numeric

constantInTime...
computeGradtrunc

computeGradtrunc function...
affine.SpatialPolygonsDataFrame

affine...
iteration

iteration number...
is.pow2

is...
lgcpPredict

lgcpPredict function...
extract

extract function...
gridav.lgcpPredict

gridav...
plot.lgcpPredict

plot...
lgcpSim

lgcpSim function...
print.dump2dir

print...
meanfield

meanfield function...
proposal.means

proposal...
varfield.lgcpPredict

varfield...
xvals.SpatialGridDataFrame

xvals...
spatialIntensities.fromXYZ

spatialIntensities...
plot.mcmcdiag

plot...
summary.lgcpgrid

summary...
GAreturnvalue.MonteCarloAverage

GAreturnvalue...
GFfinalise.dump2dir

GFfinalise...
MonteCarloAverage

MonteCarloAverage function...
affine.stppp

affine...
bt.scalar

bt...
fftinterpolate

fftinterpolate function...
gridfun.lgcpPredict

gridfun...
mcmcpars

mcmcpars function...
zvals.default

zvals...
exceedProbs

exceedProbs function...
circulant

circulant function...
hasNext.iter

hasNext...
gu

gu function...
nextStep

next step of an MCMC chain...
YfromGamma

YfromGamma function...
plot.temporalAtRisk

plot...
as.owinlist

as...
plotExceed.array

plotExceed...
GammafromY

GammafromY function...
GAreturnvalue

GAreturnvalue function...
print.fromXYZ

print...
density.stppp

density...
fftinterpolate.fromFunction

fftinterpolate...
serr

serr function...
stppp.list

stppp...
stppp

stppp function...
at

at function...
plot.lgcpgrid

plot...
stapp.SpatialPolygonsDataFrame

stapp...
print.temporalAtRisk

print...
roteffgain

roteffgain function...
selectObsWindow.default

selectObsWindow...
spatialIntensities

spatialIntensities function...
stppp.ppp

stppp...
wtowncoords

Welsh town details: location
GAfinalise.MonteCarloAverage

GAfinalise...
GFfinalise.nullFunction

GFfinalise...
extract.lgcpPredict

extract...
initialiseAMCMC.constanth

initaliseAMCMC...
quantile.lgcpgrid

quantile...
rr

rr function...
toral.cov.mat

toral...
stapp

stapp function...
fftinterpolate.fromXYZ

interpolate...
hvals.lgcpPredict

hvals...
is.SPD

is...
lgcpgrid.list

lgcpgrid...
mcmctrace

mcmctrace function...
print.lgcpgrid

print...
spatialAtRisk.bivden

spatialAtRisk...
setTxtProgressBar2

set the progress bar...
selectObsWindow

selectObsWindow function...
spatialparsEst

spatialparsEst function...
wtowns

Welsh town details: population
thetaEst

thetaEst function...
lambdaEst

lambdaEst function...
is.retain

do we retain this iteration?
print.stapp

print...
neattable

neattable function...
spatialAtRisk.default

spatialAtRisk...
showGrid.lgcpPredict

showGrid...
summary.mcmc

summary...
yvals.lgcpPredict

yvals...
as.SpatialGridDataFrame.fromXYZ

as...
expectation.lgcpPredict

expectation...
getRotation.default

getRotation...
lgcp

lgcp...
lgcpgrid

lgcpgrid function...
mcmcProgressNone

null progress monitor...
spatialAtRisk.SpatialGridDataFrame

spatialAtRisk...
target.and.grad.spatial

target...
GAinitialise.MonteCarloAverage

GAinitialise...
GAreturnvalue.nullAverage

GAreturnvalue...
GFreturnvalue.dump2dir

GFreturnvalue...
GAinitialise.nullAverage

GAinitialise...
MALAlgcp

MALAlgcp function...
GAupdate.nullAverage

GAupdate...
GFinitialise

GFinitialise function...
as.im.fromSPDF

as...
GFupdate.dump2dir

GFupdate...
fftgrid

fftgrid function...
as.stppp.stapp

as...
initialiseAMCMC

initialiseAMCMC function...
MALAlgcpSpatial

MALAlgcpSpatial function...
is.burnin

is this a burn-in iteration?
Extract.stppp

Extract...
as.list.lgcpgrid

as...
dump2dir

dump2dir function...
fftinterpolate.fromSPDF

fftinterpolate...
as.owin.stapp

as...
lgcpgrid.array

lgcpgrid...
mcmcProgressTextBar

text bar progress monitor...
meanselect

meanselect function...
identify.lgcpPredict

identify...
print.stppp

print...
nullFunction

nullFunction function...
plot.fromXYZ

plot...
muEst

muEst function...
mcmcProgressTk

graphical progress monitor...
wpopdata

Population of Welsh counties
mcmcLoop

iterator for MCMC loops...
plot.lgcpQuantiles

plot...
yvals.fromXYZ

yvals...
plotExceed.lgcpPredict

plotExceed...
spatialAtRisk.function

spatialAtRisk...
rescale.stppp

rescale...
spatialAtRisk.im

spatialAtRisk...
plotExceed

plotExceed function...
print.fromFunction

print...
print.mcmc

print...
print.gridaverage

print...
spatialAtRisk

spatialAtRisk function...
updateAMCMC.constanth

updateAMCMC...
showGrid.stppp

showGrid...
target.and.grad

target...
getRotation.stppp

getRotation...
plot.stppp

plot...
GAfinalise

GAfinalise function...
GAfinalise.nullAverage

GAfinalise...
GFinitialise.dump2dir

GFinitialise...
andrieuthomsh

andrieuthomsh function...
exceedProbsAggregated

exceedProbsAggregated function...
circulant.matrix

circulant...
showGrid

showGrid function...
spatialAtRisk.fromXYZ

spatialAtRisk...
temporalAtRisk.function

temporalAtRisk...
target.and.grad.spatiotemporal

target...
zvals.SpatialGridDataFrame

zvals...
zvals

zvals function...
GFupdate.nullFunction

GFupdate...
as.im.fromFunction

as...
lgcpForecast

lgcpForecast function...
loop.mcmc

loop over an iterator...
serr.lgcpPredict

serr...
varfield

varfield function...
as.im.fromXYZ

as...
GFfinalise

GFfinalise function...
gridInWindow

gridInWindow function...
getCounts

getCounts function...
identifygrid

identifygrid function...
plot.fromSPDF

plot...
rr.lgcpPredict

rr...
setoutput

setoutput function...
temporalAtRisk

temporalAtRisk function...
yvals.SpatialGridDataFrame

yvals...
xvals.fromXYZ

xvals...
lgcpSimSpatial

lgcpSimSpatial function...