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lgcp (version 0.9-1)
Log-Gaussian Cox Process
Description
Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process
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Install
install.packages('lgcp')
Monthly Downloads
1,097
Version
0.9-1
License
GPL-3
Maintainer
Benjamin Taylor
Last Published
December 9th, 2011
Functions in lgcp (0.9-1)
Search functions
as.SpatialGridDataFrame
as...
as.ppp.stppp
as...
constantInTime.stppp
constantInTime...
expectation
expectation function...
as.owinlist.stapp
as...
lgcpPredictAggregated
lgcpPredictAggregated function...
lgcpgrid.matrix
lgcpgrid...
multiply.list
multiply...
GAupdate.MonteCarloAverage
GAupdate...
normsq
normsq function...
GFreturnvalue
GFreturnvalue function...
affine.fromXYZ
affine...
rotmat
rotmat function...
blockcircbase
blockcircbase function...
diffnorm2
diffnorm2 function...
meanfield.lgcpPredict
meanfield...
constantInTime
constantInTime function...
hvals
hvals function...
affine.fromSPDF
affine...
inversebase
inversebase function...
lgcpPredictSpatial
lgcpPredictSpatial function...
hasNext
generic hasNext method...
print.fromSPDF
print...
nullAverage
nullAverage function...
quantile.lgcpPredict
quantile...
spatialIntensities.fromSPDF
spatialIntensities...
updateAMCMC.andrieuthomsh
updateAMCMC...
GFreturnvalue.nullFunction
GFreturnvalue...
txtProgressBar2
txtProgressBar2
affine.fromFunction
affine...
window.lgcpPredict
window...
GAinitialise
GAinitialise function...
xvals.lgcpPredict
xvals...
as.owinlist.SpatialPolygonsDataFrame
as...
evallogprobY
evallogprobY function...
yvals.default
yvals...
d.func
d...
ginhomAverage
ginhomAverage function...
constanth
constanth function...
GFupdate
GFupdate function...
grad.comp
grad...
computeGradtruncSpatioTemporal
computeGradtruncSpatioTemporal function...
gridfun
gridfun function...
KinhomAverage
KinhomAverage function...
gridav
gridav function...
computeGradtruncSpatial
computeGradtruncSpatial function...
loc2poly
loc2poly function...
eigenfrombase
eigenfrombase function...
initialiseAMCMC.andrieuthomsh
initaliseAMCMC...
showGrid.default
showGrid...
temporalAtRisk.numeric
temporalAtRisk...
mcmctrace.lgcpPredict
mcmctrace...
intens.lgcpPredict
intens...
xvals
xvals function...
intens
intens function...
yvals
yvals function...
zvals.fromXYZ
zvals...
xvals.default
xvals...
smultiply.list
smultiply...
GAupdate
GAupdate function...
circulant.numeric
circulant...
add.list
add...
getRotation
getRotation function...
image.lgcpgrid
image...
lgcppars
lgcppars function...
print.lgcpPredict
print...
resetLoop
reset iterator...
selectObsWindow.stppp
selectObsWindow...
stapp.list
stapp...
spatialAtRisk.SpatialPolygonsDataFrame
spatialAtRisk...
updateAMCMC
updateAMCMC function...
Cvb
Cvb function...
SpatialPolygonsDataFrame.stapp
SpatialPolygonsDataFrame...
as.fromXYZ.fromFunction
as...
as.fromXYZ
as...
as.stppp
as...
GFinitialise.nullFunction
GFinitialise...
mcmcProgressPrint
printing progress monitor...
constantInTime.numeric
constantInTime...
computeGradtrunc
computeGradtrunc function...
affine.SpatialPolygonsDataFrame
affine...
iteration
iteration number...
is.pow2
is...
lgcpPredict
lgcpPredict function...
extract
extract function...
gridav.lgcpPredict
gridav...
plot.lgcpPredict
plot...
lgcpSim
lgcpSim function...
print.dump2dir
print...
meanfield
meanfield function...
proposal.means
proposal...
varfield.lgcpPredict
varfield...
xvals.SpatialGridDataFrame
xvals...
spatialIntensities.fromXYZ
spatialIntensities...
plot.mcmcdiag
plot...
summary.lgcpgrid
summary...
GAreturnvalue.MonteCarloAverage
GAreturnvalue...
GFfinalise.dump2dir
GFfinalise...
MonteCarloAverage
MonteCarloAverage function...
affine.stppp
affine...
bt.scalar
bt...
fftinterpolate
fftinterpolate function...
gridfun.lgcpPredict
gridfun...
mcmcpars
mcmcpars function...
zvals.default
zvals...
exceedProbs
exceedProbs function...
circulant
circulant function...
hasNext.iter
hasNext...
gu
gu function...
nextStep
next step of an MCMC chain...
YfromGamma
YfromGamma function...
plot.temporalAtRisk
plot...
as.owinlist
as...
plotExceed.array
plotExceed...
GammafromY
GammafromY function...
GAreturnvalue
GAreturnvalue function...
print.fromXYZ
print...
density.stppp
density...
fftinterpolate.fromFunction
fftinterpolate...
serr
serr function...
stppp.list
stppp...
stppp
stppp function...
at
at function...
plot.lgcpgrid
plot...
stapp.SpatialPolygonsDataFrame
stapp...
print.temporalAtRisk
print...
roteffgain
roteffgain function...
selectObsWindow.default
selectObsWindow...
spatialIntensities
spatialIntensities function...
stppp.ppp
stppp...
wtowncoords
Welsh town details: location
GAfinalise.MonteCarloAverage
GAfinalise...
GFfinalise.nullFunction
GFfinalise...
extract.lgcpPredict
extract...
initialiseAMCMC.constanth
initaliseAMCMC...
quantile.lgcpgrid
quantile...
rr
rr function...
toral.cov.mat
toral...
stapp
stapp function...
fftinterpolate.fromXYZ
interpolate...
hvals.lgcpPredict
hvals...
is.SPD
is...
lgcpgrid.list
lgcpgrid...
mcmctrace
mcmctrace function...
print.lgcpgrid
print...
spatialAtRisk.bivden
spatialAtRisk...
setTxtProgressBar2
set the progress bar...
selectObsWindow
selectObsWindow function...
spatialparsEst
spatialparsEst function...
wtowns
Welsh town details: population
thetaEst
thetaEst function...
lambdaEst
lambdaEst function...
is.retain
do we retain this iteration?
print.stapp
print...
neattable
neattable function...
spatialAtRisk.default
spatialAtRisk...
showGrid.lgcpPredict
showGrid...
summary.mcmc
summary...
yvals.lgcpPredict
yvals...
as.SpatialGridDataFrame.fromXYZ
as...
expectation.lgcpPredict
expectation...
getRotation.default
getRotation...
lgcp
lgcp...
lgcpgrid
lgcpgrid function...
mcmcProgressNone
null progress monitor...
spatialAtRisk.SpatialGridDataFrame
spatialAtRisk...
target.and.grad.spatial
target...
GAinitialise.MonteCarloAverage
GAinitialise...
GAreturnvalue.nullAverage
GAreturnvalue...
GFreturnvalue.dump2dir
GFreturnvalue...
GAinitialise.nullAverage
GAinitialise...
MALAlgcp
MALAlgcp function...
GAupdate.nullAverage
GAupdate...
GFinitialise
GFinitialise function...
as.im.fromSPDF
as...
GFupdate.dump2dir
GFupdate...
fftgrid
fftgrid function...
as.stppp.stapp
as...
initialiseAMCMC
initialiseAMCMC function...
MALAlgcpSpatial
MALAlgcpSpatial function...
is.burnin
is this a burn-in iteration?
Extract.stppp
Extract...
as.list.lgcpgrid
as...
dump2dir
dump2dir function...
fftinterpolate.fromSPDF
fftinterpolate...
as.owin.stapp
as...
lgcpgrid.array
lgcpgrid...
mcmcProgressTextBar
text bar progress monitor...
meanselect
meanselect function...
identify.lgcpPredict
identify...
print.stppp
print...
nullFunction
nullFunction function...
plot.fromXYZ
plot...
muEst
muEst function...
mcmcProgressTk
graphical progress monitor...
wpopdata
Population of Welsh counties
mcmcLoop
iterator for MCMC loops...
plot.lgcpQuantiles
plot...
yvals.fromXYZ
yvals...
plotExceed.lgcpPredict
plotExceed...
spatialAtRisk.function
spatialAtRisk...
rescale.stppp
rescale...
spatialAtRisk.im
spatialAtRisk...
plotExceed
plotExceed function...
print.fromFunction
print...
print.mcmc
print...
print.gridaverage
print...
spatialAtRisk
spatialAtRisk function...
updateAMCMC.constanth
updateAMCMC...
showGrid.stppp
showGrid...
target.and.grad
target...
getRotation.stppp
getRotation...
plot.stppp
plot...
GAfinalise
GAfinalise function...
GAfinalise.nullAverage
GAfinalise...
GFinitialise.dump2dir
GFinitialise...
andrieuthomsh
andrieuthomsh function...
exceedProbsAggregated
exceedProbsAggregated function...
circulant.matrix
circulant...
showGrid
showGrid function...
spatialAtRisk.fromXYZ
spatialAtRisk...
temporalAtRisk.function
temporalAtRisk...
target.and.grad.spatiotemporal
target...
zvals.SpatialGridDataFrame
zvals...
zvals
zvals function...
GFupdate.nullFunction
GFupdate...
as.im.fromFunction
as...
lgcpForecast
lgcpForecast function...
loop.mcmc
loop over an iterator...
serr.lgcpPredict
serr...
varfield
varfield function...
as.im.fromXYZ
as...
GFfinalise
GFfinalise function...
gridInWindow
gridInWindow function...
getCounts
getCounts function...
identifygrid
identifygrid function...
plot.fromSPDF
plot...
rr.lgcpPredict
rr...
setoutput
setoutput function...
temporalAtRisk
temporalAtRisk function...
yvals.SpatialGridDataFrame
yvals...
xvals.fromXYZ
xvals...
lgcpSimSpatial
lgcpSimSpatial function...