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lgcp (version 0.9-2)

Log-Gaussian Cox Process

Description

Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process

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Version

Install

install.packages('lgcp')

Monthly Downloads

822

Version

0.9-2

License

GPL-3

Maintainer

Benjamin Taylor

Last Published

March 12th, 2012

Functions in lgcp (0.9-2)

GFfinalise.nullFunction

affine.SpatialPolygonsDataFrame

affine...

GAreturnvalue

GAreturnvalue function...

SpatialPolygonsDataFrame.stapp

SpatialPolygonsDataFrame...

GAinitialise function...

getCounts

getCounts function...

circulant.matrix

circulant...

GAreturnvalue.MonteCarloAverage

GAreturnvalue...

hasNext

generic hasNext method...

image.lgcpgrid

image...

computeGradtruncSpatioTemporal

computeGradtruncSpatioTemporal function...

MALAlgcpSpatial

MALAlgcpSpatial function...

hvals.lgcpPredict

hvals...

getlgcpPredictSpatialINLA

getlgcpPredictSpatialINLA function...

loop.mcmc

loop over an iterator...

identifygrid

identifygrid function...

showGrid.stppp

showGrid...

gridInWindow

gridInWindow function...

spatialAtRisk.function

is this a burn-in iteration?

mcmcProgressPrint

printing progress monitor...

lambdaEst

lambdaEst function...

spatialAtRisk.default

spatialAtRisk...

matchcovariance

matchcovariance function...

meanfield.lgcpPredictINLA

next step of an MCMC chain...

spatialAtRisk.fromXYZ

GAinitialise.nullAverage

GAinitialise...

GammafromY

GammafromY function...

GFinitialise.nullFunction

GFinitialise...

as.fromXYZ.fromFunction

as...

fftinterpolate.fromFunction

fftinterpolate...

exceedProbsAggregated

exceedProbsAggregated function...

YfromGamma

YfromGamma function...

selectObsWindow.default

evallogprobY function...

plotExceed

plotExceed function...

plot.fromXYZ

plot...

gu function...

spatialAtRisk.SpatialPolygonsDataFrame

spatialAtRisk...

wtowns

Welsh town details: population

computeGradtrunc function...

fftinterpolate

fftinterpolate function...

normsq

normsq function...

roteffgain

roteffgain function...

showGrid

showGrid function...

GAfinalise.nullAverage

GFreturnvalue.nullFunction

diffnorm2 function...

nullAverage function...

mcmcLoop

iterator for MCMC loops...

set the progress bar...

setoutput function...

spatialAtRisk.SpatialGridDataFrame

spatialAtRisk...

stapp.list

stapp...

xvals.SpatialGridDataFrame

xvals...

wtowncoords

Welsh town details: location

expectation.lgcpPredict

MonteCarloAverage function...

paramprec function...

lgcpSimSpatial function...

gridav

gridav function...

mcmcProgressNone

null progress monitor...

yvals.lgcpPredict

yvals...

initialiseAMCMC.andrieuthomsh

initialiseAMCMC.constanth

initaliseAMCMC...

target.and.grad.spatiotemporal

target...

GFreturnvalue.dump2dir

GFfinalise function...

circulant function...

yvals.fromXYZ

yvals...

as.owinlist.SpatialPolygonsDataFrame

as...

affine.fromFunction

affine...

temporalAtRisk.numeric

temporalAtRisk...

mcmcProgressTextBar

text bar progress monitor...

density.stppp

density...

expectation

expectation function...

identify.lgcpPredict

identify...

meanfield.lgcpPredict

meanfield...

nullFunction

nullFunction function...

temporalAtRisk.function

updateAMCMC function...

GFupdate.nullFunction

constanth function...

constantInTime.numeric

selectObsWindow function...

spatialAtRisk

spatialAtRisk function...

updateAMCMC.constanth

GFinitialise function...

blockcircbase

blockcircbase function...

fftinterpolate.fromXYZ

graphical progress monitor...

spatialIntensities.fromXYZ

spatialIntensities...

stapp.SpatialPolygonsDataFrame

stapp...

KinhomAverage

KinhomAverage function...

ginhomAverage function...

is.retain

do we retain this iteration?

lgcpPredictAggregated

lgcpPredictAggregated function...

spatialparsEst function...

lgcpPredictSpatialINLA

lgcpPredictSpatialINLA function...

hasNext.iter

hasNext...

lgcpPredictSpatial

lgcpPredictSpatial function...

mcmctrace.lgcpPredict

updateAMCMC.andrieuthomsh

updateAMCMC...

varfield

varfield function...

as.SpatialGridDataFrame.fromXYZ

as...

fftinterpolate.fromSPDF

fftinterpolate...

print.fromFunction

print...

selectObsWindow.stppp

selectObsWindow...

spatialAtRisk.im

spatialAtRisk...

GAinitialise.MonteCarloAverage

GAinitialise...

temporalAtRisk

temporalAtRisk function...

plotExceed.lgcpPredict

plotExceed...

GAupdate.MonteCarloAverage

GAupdate...

GAreturnvalue.nullAverage

GAreturnvalue...

andrieuthomsh

andrieuthomsh function...

GFreturnvalue

GFreturnvalue function...

eigenfrombase

eigenfrombase function...

meanselect function...

getRotation

getRotation function...

grad.comp

grad...

as.SpatialGridDataFrame

initialiseAMCMC function...

lgcpPredict function...

is.SPD

is...

meanfield

meanfield function...

neattable

neattable function...

mcmctrace

mcmctrace function...

target.and.grad.spatial

target...

wpopdata

Population of Welsh counties

xvals.fromXYZ

xvals...

GAfinalise

GAfinalise function...

constantInTime

constantInTime function...

GAfinalise.MonteCarloAverage

sparsebase function...

stppp.list

stppp...

inversebase

inversebase function...

varfield.lgcpPredictINLA

paramprecbase function...

print.gridaverage

print...

zvals.SpatialGridDataFrame

GFinitialise.dump2dir

computeGradtruncSpatial

computeGradtruncSpatial function...

exceedProbs

exceedProbs function...

d.func

d...

lgcpForecast

lgcpForecast function...

spatialIntensities function...

spatialIntensities.fromSPDF

spatialIntensities...

yvals.SpatialGridDataFrame

yvals...