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lgcp (version 0.9-3)

Log-Gaussian Cox Process

Description

Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process

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Version

Install

install.packages('lgcp')

Monthly Downloads

822

Version

0.9-3

License

GPL-3

Maintainer

Benjamin Taylor

Last Published

March 26th, 2012

Functions in lgcp (0.9-3)

Cvb

Cvb function...
andrieuthomsh

andrieuthomsh function...
affine.fromSPDF

affine...
dump2dir

dump2dir function...
lambdaEst

lambdaEst function...
circulant

circulant function...
expectation.lgcpPredict

expectation...
meanfield

meanfield function...
multiply.list

multiply...
spatialAtRisk.default

spatialAtRisk...
sparsebase

sparsebase function...
xvals.SpatialGridDataFrame

xvals...
spatialIntensities.fromSPDF

spatialIntensities...
xvals

xvals function...
GAfinalise.nullAverage

GAfinalise...
GFinitialise.dump2dir

GFinitialise...
as.SpatialGridDataFrame.fromXYZ

as...
as.owinlist

as...
as.owinlist.stapp

as...
is.burnin

is this a burn-in iteration?
lgcpPredictSpatial

lgcpPredictSpatial function...
computeGradtruncSpatioTemporal

computeGradtruncSpatioTemporal function...
loop.mcmc

loop over an iterator...
lgcp

lgcp...
mcmctrace

mcmctrace function...
lgcppars

lgcppars function...
mcmcpars

mcmcpars function...
serr

serr function...
print.gridaverage

print...
lgcpSim

lgcpSim function...
selectObsWindow.default

selectObsWindow...
spatialAtRisk.bivden

spatialAtRisk...
temporalAtRisk.numeric

temporalAtRisk...
summary.mcmc

summary...
GFreturnvalue

GFreturnvalue function...
computeGradtruncSpatial

computeGradtruncSpatial function...
initialiseAMCMC.andrieuthomsh

initaliseAMCMC...
mcmctrace.lgcpPredict

mcmctrace...
meanfield.lgcpPredict

meanfield...
muEst

muEst function...
GAinitialise.MonteCarloAverage

GAinitialise...
GFfinalise.dump2dir

GFfinalise...
print.lgcpPredict

print...
add.list

add...
updateAMCMC

updateAMCMC function...
xvals.fromXYZ

xvals...
xvals.lgcpPredict

xvals...
temporalAtRisk.function

temporalAtRisk...
as.stppp.stapp

as...
d.func

d...
nextStep

next step of an MCMC chain...
spatialAtRisk.im

spatialAtRisk...
stppp.ppp

stppp...
yvals.fromXYZ

yvals...
zvals.SpatialGridDataFrame

zvals...
plot.fromXYZ

plot...
SpatialPolygonsDataFrame.stapp

SpatialPolygonsDataFrame...
MALAlgcp

MALAlgcp function...
GAfinalise.MonteCarloAverage

GAfinalise...
Extract.stppp

Extract...
affine.SpatialPolygonsDataFrame

affine...
as.im.fromXYZ

as...
GAupdate.MonteCarloAverage

GAupdate...
as.owin.stapp

as...
constanth

constanth function...
affine.stppp

affine...
as.owinlist.SpatialPolygonsDataFrame

as...
GAreturnvalue.MonteCarloAverage

GAreturnvalue...
fftinterpolate.fromSPDF

fftinterpolate...
blockcircbase

blockcircbase function...
constantInTime.stppp

constantInTime...
is.SPD

is...
circulant.matrix

circulant...
paramprec

paramprec function...
is.retain

do we retain this iteration?
hvals.lgcpPredict

hvals...
exceedProbs

exceedProbs function...
GFinitialise.nullFunction

GFinitialise...
gridfun

gridfun function...
gridav.lgcpPredict

gridav...
plotExceed.lgcpPredict

plotExceed...
mcmcProgressTextBar

text bar progress monitor...
print.fromXYZ

print...
initialiseAMCMC.constanth

initaliseAMCMC...
neigh2D

neigh2D function...
print.fromSPDF

print...
getRotation

getRotation function...
plot.lgcpPredict

plot...
temporalAtRisk

temporalAtRisk function...
selectObsWindow

selectObsWindow function...
lgcpgrid.array

lgcpgrid...
selectObsWindow.stppp

selectObsWindow...
quantile.lgcpgrid

quantile...
eigenfrombase

eigenfrombase function...
print.lgcpgrid

print...
print.stapp

print...
spatialAtRisk.function

spatialAtRisk...
updateAMCMC.constanth

updateAMCMC...
thetaEst

thetaEst function...
GammafromY

GammafromY function...
spatialIntensities.fromXYZ

spatialIntensities...
spatialparsEst

spatialparsEst function...
target.and.grad.spatiotemporal

target...
YfromGamma

YfromGamma function...
mcmcLoop

iterator for MCMC loops...
GAupdate.nullAverage

GAupdate...
wtowncoords

Welsh town details: location
extract

extract function...
density.stppp

density...
GAinitialise

GAinitialise function...
KinhomAverage

KinhomAverage function...
getRotation.stppp

getRotation...
getlgcpPredictSpatialINLA

getlgcpPredictSpatialINLA function...
gridfun.lgcpPredict

gridfun...
gridav

gridav function...
circulant.numeric

circulant...
lgcpSimSpatial

lgcpSimSpatial function...
expectation

expectation function...
gridInWindow

gridInWindow function...
lgcpPredict

lgcpPredict function...
image.lgcpgrid

image...
intens

intens function...
lgcpgrid.matrix

lgcpgrid...
print.temporalAtRisk

print...
spatialAtRisk.fromXYZ

spatialAtRisk...
iteration

iteration number...
loc2poly

loc2poly function...
setTxtProgressBar2

set the progress bar...
rescale.stppp

rescale...
window.lgcpPredict

window...
rotmat

rotmat function...
stapp

stapp function...
paramprecbase

paramprecbase function...
lgcpForecast

lgcpForecast function...
varfield.lgcpPredict

varfield...
lgcpPredictSpatialINLA

lgcpPredictSpatialINLA function...
matchcovariance

matchcovariance function...
mcmcProgressPrint

printing progress monitor...
showGrid.lgcpPredict

showGrid...
stppp.list

stppp...
summary.lgcpgrid

summary...
txtProgressBar2

txtProgressBar2
GFreturnvalue.dump2dir

GFreturnvalue...
GFinitialise

GFinitialise function...
as.fromXYZ.fromFunction

as...
as.ppp.stppp

as...
GFreturnvalue.nullFunction

GFreturnvalue...
GFupdate.nullFunction

GFupdate...
at

at function...
fftinterpolate.fromXYZ

interpolate...
nullFunction

nullFunction function...
plot.fromSPDF

plot...
lgcpgrid

lgcpgrid function...
xvals.default

xvals...
fftinterpolate

fftinterpolate function...
hvals

hvals function...
varfield

varfield function...
is.pow2

is...
yvals.SpatialGridDataFrame

yvals...
wtowns

Welsh town details: population
zvals.fromXYZ

zvals...
GAreturnvalue.nullAverage

GAreturnvalue...
GFupdate.dump2dir

GFupdate...
fftgrid

fftgrid function...
ginhomAverage

ginhomAverage function...
hasNext

generic hasNext method...
identifygrid

identifygrid function...
fftinterpolate.fromFunction

fftinterpolate...
MonteCarloAverage

MonteCarloAverage function...
quantile.lgcpPredict

quantile...
GAupdate

GAupdate function...
print.dump2dir

print...
stapp.list

stapp...
as.im.fromSPDF

as...
mcmcProgressTk

graphical progress monitor...
target.and.grad.spatial

target...
yvals.default

yvals...
spatialAtRisk.SpatialGridDataFrame

spatialAtRisk...
spatialIntensities

spatialIntensities function...
mcmcProgressNone

null progress monitor...
print.mcmc

print...
print.stppp

print...
roteffgain

roteffgain function...
showGrid

showGrid function...
showGrid.stppp

showGrid...
varfield.lgcpPredictINLA

varfield...
yvals

yvals function...
yvals.lgcpPredict

yvals...
MALAlgcpSpatial

MALAlgcpSpatial function...
extract.lgcpPredict

extract...
GAfinalise

GAfinalise function...
smultiply.list

smultiply...
getCounts

getCounts function...
hasNext.iter

hasNext...
as.list.lgcpgrid

as...
as.SpatialGridDataFrame

as...
affine.fromFunction

affine...
identify.lgcpPredict

identify...
nullAverage

nullAverage function...
neattable

neattable function...
rr.lgcpPredict

rr...
intens.lgcpPredict

intens...
plot.lgcpQuantiles

plot...
initialiseAMCMC

initialiseAMCMC function...
affine.fromXYZ

affine...
resetLoop

reset iterator...
exceedProbsAggregated

exceedProbsAggregated function...
inversebase

inversebase function...
getRotation.default

getRotation...
meanfield.lgcpPredictINLA

meanfield...
stapp.SpatialPolygonsDataFrame

stapp...
spatialAtRisk.SpatialPolygonsDataFrame

spatialAtRisk...
serr.lgcpPredict

serr...
bt.scalar

bt...
constantInTime

constantInTime function...
plotExceed.array

plotExceed...
plot.lgcpgrid

plot...
rr

rr function...
constantInTime.numeric

constantInTime...
GAinitialise.nullAverage

GAinitialise...
GAreturnvalue

GAreturnvalue function...
GFupdate

GFupdate function...
as.im.fromFunction

as...
as.stppp

as...
gu

gu function...
lgcpgrid.list

lgcpgrid...
plot.temporalAtRisk

plot...
plot.stppp

plot...
showGrid.default

showGrid...
spatialAtRisk

spatialAtRisk function...
updateAMCMC.andrieuthomsh

updateAMCMC...
toral.cov.mat

toral...
lgcpPredictAggregated

lgcpPredictAggregated function...
plot.mcmcdiag

plot...
plotExceed

plotExceed function...
setoutput

setoutput function...
stppp

stppp function...
zvals

zvals function...
GFfinalise

GFfinalise function...
GFfinalise.nullFunction

GFfinalise...
as.fromXYZ

as...
print.fromFunction

print...
wpopdata

Population of Welsh counties
zvals.default

zvals...