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lgcp (version 0.9-3)
Log-Gaussian Cox Process
Description
Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process
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Install
install.packages('lgcp')
Monthly Downloads
1,097
Version
0.9-3
License
GPL-3
Maintainer
Benjamin Taylor
Last Published
March 26th, 2012
Functions in lgcp (0.9-3)
Search functions
Cvb
Cvb function...
andrieuthomsh
andrieuthomsh function...
affine.fromSPDF
affine...
dump2dir
dump2dir function...
lambdaEst
lambdaEst function...
circulant
circulant function...
expectation.lgcpPredict
expectation...
meanfield
meanfield function...
multiply.list
multiply...
spatialAtRisk.default
spatialAtRisk...
sparsebase
sparsebase function...
xvals.SpatialGridDataFrame
xvals...
spatialIntensities.fromSPDF
spatialIntensities...
xvals
xvals function...
GAfinalise.nullAverage
GAfinalise...
GFinitialise.dump2dir
GFinitialise...
as.SpatialGridDataFrame.fromXYZ
as...
as.owinlist
as...
as.owinlist.stapp
as...
is.burnin
is this a burn-in iteration?
lgcpPredictSpatial
lgcpPredictSpatial function...
computeGradtruncSpatioTemporal
computeGradtruncSpatioTemporal function...
loop.mcmc
loop over an iterator...
lgcp
lgcp...
mcmctrace
mcmctrace function...
lgcppars
lgcppars function...
mcmcpars
mcmcpars function...
serr
serr function...
print.gridaverage
print...
lgcpSim
lgcpSim function...
selectObsWindow.default
selectObsWindow...
spatialAtRisk.bivden
spatialAtRisk...
temporalAtRisk.numeric
temporalAtRisk...
summary.mcmc
summary...
GFreturnvalue
GFreturnvalue function...
computeGradtruncSpatial
computeGradtruncSpatial function...
initialiseAMCMC.andrieuthomsh
initaliseAMCMC...
mcmctrace.lgcpPredict
mcmctrace...
meanfield.lgcpPredict
meanfield...
muEst
muEst function...
GAinitialise.MonteCarloAverage
GAinitialise...
GFfinalise.dump2dir
GFfinalise...
print.lgcpPredict
print...
add.list
add...
updateAMCMC
updateAMCMC function...
xvals.fromXYZ
xvals...
xvals.lgcpPredict
xvals...
temporalAtRisk.function
temporalAtRisk...
as.stppp.stapp
as...
d.func
d...
nextStep
next step of an MCMC chain...
spatialAtRisk.im
spatialAtRisk...
stppp.ppp
stppp...
yvals.fromXYZ
yvals...
zvals.SpatialGridDataFrame
zvals...
plot.fromXYZ
plot...
SpatialPolygonsDataFrame.stapp
SpatialPolygonsDataFrame...
MALAlgcp
MALAlgcp function...
GAfinalise.MonteCarloAverage
GAfinalise...
Extract.stppp
Extract...
affine.SpatialPolygonsDataFrame
affine...
as.im.fromXYZ
as...
GAupdate.MonteCarloAverage
GAupdate...
as.owin.stapp
as...
constanth
constanth function...
affine.stppp
affine...
as.owinlist.SpatialPolygonsDataFrame
as...
GAreturnvalue.MonteCarloAverage
GAreturnvalue...
fftinterpolate.fromSPDF
fftinterpolate...
blockcircbase
blockcircbase function...
constantInTime.stppp
constantInTime...
is.SPD
is...
circulant.matrix
circulant...
paramprec
paramprec function...
is.retain
do we retain this iteration?
hvals.lgcpPredict
hvals...
exceedProbs
exceedProbs function...
GFinitialise.nullFunction
GFinitialise...
gridfun
gridfun function...
gridav.lgcpPredict
gridav...
plotExceed.lgcpPredict
plotExceed...
mcmcProgressTextBar
text bar progress monitor...
print.fromXYZ
print...
initialiseAMCMC.constanth
initaliseAMCMC...
neigh2D
neigh2D function...
print.fromSPDF
print...
getRotation
getRotation function...
plot.lgcpPredict
plot...
temporalAtRisk
temporalAtRisk function...
selectObsWindow
selectObsWindow function...
lgcpgrid.array
lgcpgrid...
selectObsWindow.stppp
selectObsWindow...
quantile.lgcpgrid
quantile...
eigenfrombase
eigenfrombase function...
print.lgcpgrid
print...
print.stapp
print...
spatialAtRisk.function
spatialAtRisk...
updateAMCMC.constanth
updateAMCMC...
thetaEst
thetaEst function...
GammafromY
GammafromY function...
spatialIntensities.fromXYZ
spatialIntensities...
spatialparsEst
spatialparsEst function...
target.and.grad.spatiotemporal
target...
YfromGamma
YfromGamma function...
mcmcLoop
iterator for MCMC loops...
GAupdate.nullAverage
GAupdate...
wtowncoords
Welsh town details: location
extract
extract function...
density.stppp
density...
GAinitialise
GAinitialise function...
KinhomAverage
KinhomAverage function...
getRotation.stppp
getRotation...
getlgcpPredictSpatialINLA
getlgcpPredictSpatialINLA function...
gridfun.lgcpPredict
gridfun...
gridav
gridav function...
circulant.numeric
circulant...
lgcpSimSpatial
lgcpSimSpatial function...
expectation
expectation function...
gridInWindow
gridInWindow function...
lgcpPredict
lgcpPredict function...
image.lgcpgrid
image...
intens
intens function...
lgcpgrid.matrix
lgcpgrid...
print.temporalAtRisk
print...
spatialAtRisk.fromXYZ
spatialAtRisk...
iteration
iteration number...
loc2poly
loc2poly function...
setTxtProgressBar2
set the progress bar...
rescale.stppp
rescale...
window.lgcpPredict
window...
rotmat
rotmat function...
stapp
stapp function...
paramprecbase
paramprecbase function...
lgcpForecast
lgcpForecast function...
varfield.lgcpPredict
varfield...
lgcpPredictSpatialINLA
lgcpPredictSpatialINLA function...
matchcovariance
matchcovariance function...
mcmcProgressPrint
printing progress monitor...
showGrid.lgcpPredict
showGrid...
stppp.list
stppp...
summary.lgcpgrid
summary...
txtProgressBar2
txtProgressBar2
GFreturnvalue.dump2dir
GFreturnvalue...
GFinitialise
GFinitialise function...
as.fromXYZ.fromFunction
as...
as.ppp.stppp
as...
GFreturnvalue.nullFunction
GFreturnvalue...
GFupdate.nullFunction
GFupdate...
at
at function...
fftinterpolate.fromXYZ
interpolate...
nullFunction
nullFunction function...
plot.fromSPDF
plot...
lgcpgrid
lgcpgrid function...
xvals.default
xvals...
fftinterpolate
fftinterpolate function...
hvals
hvals function...
varfield
varfield function...
is.pow2
is...
yvals.SpatialGridDataFrame
yvals...
wtowns
Welsh town details: population
zvals.fromXYZ
zvals...
GAreturnvalue.nullAverage
GAreturnvalue...
GFupdate.dump2dir
GFupdate...
fftgrid
fftgrid function...
ginhomAverage
ginhomAverage function...
hasNext
generic hasNext method...
identifygrid
identifygrid function...
fftinterpolate.fromFunction
fftinterpolate...
MonteCarloAverage
MonteCarloAverage function...
quantile.lgcpPredict
quantile...
GAupdate
GAupdate function...
print.dump2dir
print...
stapp.list
stapp...
as.im.fromSPDF
as...
mcmcProgressTk
graphical progress monitor...
target.and.grad.spatial
target...
yvals.default
yvals...
spatialAtRisk.SpatialGridDataFrame
spatialAtRisk...
spatialIntensities
spatialIntensities function...
mcmcProgressNone
null progress monitor...
print.mcmc
print...
print.stppp
print...
roteffgain
roteffgain function...
showGrid
showGrid function...
showGrid.stppp
showGrid...
varfield.lgcpPredictINLA
varfield...
yvals
yvals function...
yvals.lgcpPredict
yvals...
MALAlgcpSpatial
MALAlgcpSpatial function...
extract.lgcpPredict
extract...
GAfinalise
GAfinalise function...
smultiply.list
smultiply...
getCounts
getCounts function...
hasNext.iter
hasNext...
as.list.lgcpgrid
as...
as.SpatialGridDataFrame
as...
affine.fromFunction
affine...
identify.lgcpPredict
identify...
nullAverage
nullAverage function...
neattable
neattable function...
rr.lgcpPredict
rr...
intens.lgcpPredict
intens...
plot.lgcpQuantiles
plot...
initialiseAMCMC
initialiseAMCMC function...
affine.fromXYZ
affine...
resetLoop
reset iterator...
exceedProbsAggregated
exceedProbsAggregated function...
inversebase
inversebase function...
getRotation.default
getRotation...
meanfield.lgcpPredictINLA
meanfield...
stapp.SpatialPolygonsDataFrame
stapp...
spatialAtRisk.SpatialPolygonsDataFrame
spatialAtRisk...
serr.lgcpPredict
serr...
bt.scalar
bt...
constantInTime
constantInTime function...
plotExceed.array
plotExceed...
plot.lgcpgrid
plot...
rr
rr function...
constantInTime.numeric
constantInTime...
GAinitialise.nullAverage
GAinitialise...
GAreturnvalue
GAreturnvalue function...
GFupdate
GFupdate function...
as.im.fromFunction
as...
as.stppp
as...
gu
gu function...
lgcpgrid.list
lgcpgrid...
plot.temporalAtRisk
plot...
plot.stppp
plot...
showGrid.default
showGrid...
spatialAtRisk
spatialAtRisk function...
updateAMCMC.andrieuthomsh
updateAMCMC...
toral.cov.mat
toral...
lgcpPredictAggregated
lgcpPredictAggregated function...
plot.mcmcdiag
plot...
plotExceed
plotExceed function...
setoutput
setoutput function...
stppp
stppp function...
zvals
zvals function...
GFfinalise
GFfinalise function...
GFfinalise.nullFunction
GFfinalise...
as.fromXYZ
as...
print.fromFunction
print...
wpopdata
Population of Welsh counties
zvals.default
zvals...