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lgcp (version 0.9-4-2)
Log-Gaussian Cox Process
Description
Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process
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Install
install.packages('lgcp')
Monthly Downloads
993
Version
0.9-4-2
License
GPL-3
Maintainer
Benjamin Taylor
Last Published
May 30th, 2012
Functions in lgcp (0.9-4-2)
Search functions
GAupdate.MonteCarloAverage
GAupdate...
GAreturnvalue.nullAverage
GAreturnvalue...
hvals.lgcpPredict
hvals...
GFfinalise.nullFunction
GFfinalise...
GFinitialise.nullFunction
GFinitialise...
GFinitialise.dump2dir
GFinitialise...
GAreturnvalue.MonteCarloAverage
GAreturnvalue...
getRotation.default
getRotation...
constanth
constanth function...
at
at function...
Cvb
Cvb function...
GFreturnvalue
GFreturnvalue function...
GFreturnvalue.dump2dir
GFreturnvalue...
MALAlgcp
MALAlgcp function...
image.lgcpgrid
image...
as.ppp.stppp
as...
as.owinlist.SpatialPolygonsDataFrame
as...
add.list
add...
discreteWindow
discreteWindow function...
circulant.matrix
circulant...
nullFunction
nullFunction function...
GFinitialise
GFinitialise function...
as.SpatialGridDataFrame.fromXYZ
as...
GAfinalise.nullAverage
GAfinalise...
GAinitialise.nullAverage
GAinitialise...
MonteCarloAverage
MonteCarloAverage function...
GAinitialise.MonteCarloAverage
GAinitialise...
bt.scalar
bt...
expectation.lgcpPredict
expectation...
extract.lgcpPredict
extract...
loop.mcmc
loop over an iterator...
gu
gu function...
plot.stppp
plot...
plot.mcmcdiag
plot...
GFupdate
GFupdate function...
as.im.fromFunction
as...
density.stppp
density...
GFupdate.nullFunction
GFupdate...
blockcircbase
blockcircbase function...
as.owinlist.stapp
as...
print.temporalAtRisk
print...
meanfield.lgcpPredictINLA
meanfield...
exceedProbs
exceedProbs function...
plot.fromXYZ
plot...
intens
intens function...
lgcpForecast
lgcpForecast function...
plot.lgcpgrid
plot...
integerise.stppp
integerise...
is.burnin
is this a burn-in iteration?
roteffgain
roteffgain function...
summary.mcmc
summary...
spatialAtRisk.SpatialGridDataFrame
spatialAtRisk...
wtowncoords
Welsh town details: location
initialiseAMCMC.constanth
initaliseAMCMC...
lgcpPredictSpatialINLA
lgcpPredictSpatialINLA function...
plot.lgcpPredict
plot...
spatialAtRisk.SpatialPolygonsDataFrame
spatialAtRisk...
lgcpgrid.matrix
lgcpgrid...
stapp.list
stapp...
Extract.stppp
Extract...
spatialIntensities
spatialIntensities function...
print.gridaverage
print...
affine.fromXYZ
affine...
eigenfrombase
eigenfrombase function...
constantInTime.stppp
constantInTime...
identify.lgcpPredict
identify...
is.SPD
is...
plotExceed.lgcpPredict
plotExceed...
stppp
stppp function...
lgcpPredict
lgcpPredict function...
dump2dir
dump2dir function...
fftinterpolate.fromFunction
fftinterpolate...
inversebase
inversebase function...
mcmcProgressTextBar
text bar progress monitor...
computeGradtruncSpatioTemporal
computeGradtruncSpatioTemporal function...
lgcp
lgcp...
SpatialPolygonsDataFrame.stapp
SpatialPolygonsDataFrame...
KinhomAverage
KinhomAverage function...
GAupdate.nullAverage
GAupdate...
print.lgcpPredict
print...
integerise
integerise function...
print.fromXYZ
print...
mcmcProgressTk
graphical progress monitor...
stppp.ppp
stppp...
loc2poly
loc2poly function...
spatialIntensities.fromXYZ
spatialIntensities...
yvals.lgcpPredict
yvals...
as.im.fromXYZ
as...
window.lgcpPredict
window...
zvals.fromXYZ
zvals...
target.and.grad.spatial
target...
xvals.SpatialGridDataFrame
xvals...
constantInTime.numeric
constantInTime...
lgcpPredictAggregated
lgcpPredictAggregated function...
print.mcmc
print...
mcmctrace
mcmctrace function...
lambdaEst
lambdaEst function...
rotmat
rotmat function...
as.im.fromSPDF
as...
zvals.default
zvals...
as.list.lgcpgrid
as...
expectation
expectation function...
plotExceed
plotExceed function...
rescale.stppp
rescale...
fftgrid
fftgrid function...
mcmcProgressNone
null progress monitor...
hvals
hvals function...
spatialAtRisk
spatialAtRisk function...
initialiseAMCMC.andrieuthomsh
initaliseAMCMC...
yvals
yvals function...
hasNext
generic hasNext method...
resetLoop
reset iterator...
gridav
gridav function...
spatialAtRisk.default
spatialAtRisk...
nextStep
next step of an MCMC chain...
plot.fromSPDF
plot...
print.lgcpgrid
print...
smultiply.list
smultiply...
mcmcLoop
iterator for MCMC loops...
thetaEst
thetaEst function...
showGrid.default
showGrid...
andrieuthomsh
andrieuthomsh function...
mcmctrace.lgcpPredict
mcmctrace...
print.fromSPDF
print...
plot.temporalAtRisk
plot...
updateAMCMC.constanth
updateAMCMC...
toral.cov.mat
toral...
discreteWindow.lgcpPredict
discreteWindow...
is.retain
do we retain this iteration?
hasNext.iter
hasNext...
extract
extract function...
lgcpgrid.array
lgcpgrid...
gridfun.lgcpPredict
gridfun...
gridfun
gridfun function...
lgcppars
lgcppars function...
summary.lgcpgrid
summary...
varfield.lgcpPredict
varfield...
updateAMCMC
updateAMCMC function...
yvals.default
yvals...
plotExceed.array
plotExceed...
GAinitialise
GAinitialise function...
meanfield.lgcpPredict
meanfield...
selectObsWindow
selectObsWindow function...
paramprecbase
paramprecbase function...
selectObsWindow.stppp
selectObsWindow...
spatialparsEst
spatialparsEst function...
getRotation.stppp
getRotation...
lgcpgrid.list
lgcpgrid...
showGrid
showGrid function...
nullAverage
nullAverage function...
meanfield
meanfield function...
spatialAtRisk.im
spatialAtRisk...
rr.lgcpPredict
rr...
print.stppp
print...
seintens
seintens function...
showGrid.lgcpPredict
showGrid...
yvals.fromXYZ
yvals...
setoutput
setoutput function...
wtowns
Welsh town details: population
txtProgressBar2
txtProgressBar2
spatialIntensities.fromSPDF
spatialIntensities...
stapp
stapp function...
as.stppp
as...
yvals.SpatialGridDataFrame
yvals...
xvals
xvals function...
getlgcpPredictSpatialINLA
getlgcpPredictSpatialINLA function...
lgcpgrid
lgcpgrid function...
iteration
iteration number...
mcmcpars
mcmcpars function...
rr
rr function...
varfield.lgcpPredictINLA
varfield...
GFfinalise.dump2dir
GFfinalise...
temporalAtRisk
temporalAtRisk function...
zvals.SpatialGridDataFrame
zvals...
GFfinalise
GFfinalise function...
GAupdate
GAupdate function...
affine.fromFunction
affine...
.onAttach
.onAttach
getRotation
getRotation function...
gridav.lgcpPredict
gridav...
selectObsWindow.default
selectObsWindow...
stppp.list
stppp...
as.array.lgcpgrid
as...
varfield
varfield function...
is.pow2
is...
lgcpPredictSpatial
lgcpPredictSpatial function...
setTxtProgressBar2
set the progress bar...
muEst
muEst function...
neigh2D
neigh2D function...
print.stapp
print...
seintens.lgcpPredict
seintens...
spatialAtRisk.fromXYZ
spatialAtRisk...
stapp.SpatialPolygonsDataFrame
stapp...
GAfinalise
GAfinalise function...
GFupdate.dump2dir
GFupdate...
gridInWindow
gridInWindow function...
lgcpSimSpatial
lgcpSimSpatial function...
multiply.list
multiply...
serr.lgcpPredict
serr...
print.dump2dir
print...
wpopdata
Population of Welsh counties
showGrid.stppp
showGrid...
xvals.default
xvals...
xvals.fromXYZ
xvals...
GAreturnvalue
GAreturnvalue function...
affine.fromSPDF
affine...
affine.stppp
affine...
YfromGamma
YfromGamma function...
as.fromXYZ.fromFunction
as...
as.fromXYZ
as...
lgcpSim
lgcpSim function...
mcmcProgressPrint
printing progress monitor...
zvals
zvals function...
affine.SpatialPolygonsDataFrame
affine...
MALAlgcpSpatial
MALAlgcpSpatial function...
circulant
circulant function...
as.stppp.stapp
as...
d.func
d...
computeGradtruncSpatial
computeGradtruncSpatial function...
circulant.numeric
circulant...
fftinterpolate
fftinterpolate function...
intens.lgcpPredict
intens...
plot.lgcpQuantiles
plot...
print.fromFunction
print...
quantile.lgcpgrid
quantile...
sparsebase
sparsebase function...
spatialAtRisk.function
spatialAtRisk...
temporalAtRisk.function
temporalAtRisk...
updateAMCMC.andrieuthomsh
updateAMCMC...
temporalAtRisk.numeric
temporalAtRisk...
xvals.lgcpPredict
xvals...
GFreturnvalue.nullFunction
GFreturnvalue...
exceedProbsAggregated
exceedProbsAggregated function...
getCounts
getCounts function...
matchcovariance
matchcovariance function...
paramprec
paramprec function...
quantile.lgcpPredict
quantile...
spatialAtRisk.bivden
spatialAtRisk...
target.and.grad.spatiotemporal
target...
as.owinlist
as...
fftinterpolate.fromSPDF
fftinterpolate...
ginhomAverage
ginhomAverage function...
fftinterpolate.fromXYZ
interpolate...
identifygrid
identifygrid function...
initialiseAMCMC
initialiseAMCMC function...
serr
serr function...
GAfinalise.MonteCarloAverage
GAfinalise...
GammafromY
GammafromY function...
as.SpatialGridDataFrame
as...
as.owin.stapp
as...
constantInTime
constantInTime function...
neattable
neattable function...