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lgcp (version 0.9-5)
Log-Gaussian Cox Process
Description
Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process
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Install
install.packages('lgcp')
Monthly Downloads
1,097
Version
0.9-5
License
GPL-3
Maintainer
Benjamin Taylor
Last Published
June 11th, 2012
Functions in lgcp (0.9-5)
Search functions
GAupdate.MonteCarloAverage
GAupdate...
expectation.lgcpPredict
expectation...
extract.lgcpPredict
extract...
extract
extract function...
exceedProbs
exceedProbs function...
nextStep
next step of an MCMC chain...
as.fromXYZ.fromFunction
as...
showGrid.stppp
showGrid...
fftinterpolate.fromSPDF
fftinterpolate...
is.SPD
is...
showGrid.default
showGrid...
plot.lgcpQuantiles
plot...
spatialIntensities.fromXYZ
spatialIntensities...
as.owinlist.stapp
as...
lgcppars
lgcppars function...
nullAverage
nullAverage function...
hasNext
generic hasNext method...
thetaEst
thetaEst function...
gridfun
gridfun function...
mcmcLoop
iterator for MCMC loops...
spatialAtRisk.SpatialPolygonsDataFrame
spatialAtRisk...
spatialIntensities.fromSPDF
spatialIntensities...
wtowncoords
Welsh town details: location
stppp.list
stppp...
print.fromSPDF
print...
GAfinalise.nullAverage
GAfinalise...
KinhomAverage
KinhomAverage function...
GFinitialise
GFinitialise function...
at
at function...
as.SpatialGridDataFrame
as...
gridav.lgcpPredict
gridav...
lgcpForecast
lgcpForecast function...
lgcpSim
lgcpSim function...
mcmcProgressTk
graphical progress monitor...
GAinitialise.MonteCarloAverage
GAinitialise...
print.lgcpPredict
print...
smultiply.list
smultiply...
plotExceed
plotExceed function...
zvals.fromXYZ
zvals...
GAinitialise.nullAverage
GAinitialise...
GAreturnvalue.nullAverage
GAreturnvalue...
gridfun.lgcpPredict
gridfun...
GAinitialise
GAinitialise function...
as.SpatialGridDataFrame.fromXYZ
as...
gridInWindow
gridInWindow function...
getRotation
getRotation function...
image.lgcpgrid
image...
is.retain
do we retain this iteration?
lgcpgrid.array
lgcpgrid...
mcmcProgressNone
null progress monitor...
meanfield.lgcpPredictINLA
meanfield...
plot.fromSPDF
plot...
paramprec
paramprec function...
GAupdate
GAupdate function...
plotExceed.array
plotExceed...
circulant
circulant function...
.onAttach
.onAttach
selectObsWindow
selectObsWindow function...
constantInTime
constantInTime function...
fftgrid
fftgrid function...
quantile.lgcpgrid
quantile...
yvals.fromXYZ
yvals...
plotExceed.lgcpPredict
plotExceed...
target.and.grad.spatiotemporal
target...
intens.lgcpPredict
intens...
SpatialPolygonsDataFrame.stapp
SpatialPolygonsDataFrame...
YfromGamma
YfromGamma function...
getlgcpPredictSpatialINLA
getlgcpPredictSpatialINLA function...
GFfinalise.nullFunction
GFfinalise...
hasNext.iter
hasNext...
GFreturnvalue.nullFunction
GFreturnvalue...
MonteCarloAverage
MonteCarloAverage function...
lgcpPredict
lgcpPredict function...
as.owinlist.SpatialPolygonsDataFrame
as...
d.func
d...
as.fromXYZ
as...
lgcpgrid.matrix
lgcpgrid...
fftinterpolate.fromFunction
fftinterpolate...
Extract.stppp
Extract...
mcmcProgressTextBar
text bar progress monitor...
is.pow2
is...
rr
rr function...
GAreturnvalue
GAreturnvalue function...
mcmcProgressPrint
printing progress monitor...
plot.lgcpPredict
plot...
affine.stppp
affine...
affine.fromXYZ
affine...
plot.mcmcdiag
plot...
print.fromXYZ
print...
matchcovariance
matchcovariance function...
seintens.lgcpPredict
seintens...
iteration
iteration number...
print.lgcpgrid
print...
loop.mcmc
loop over an iterator...
loc2poly
loc2poly function...
spatialAtRisk
spatialAtRisk function...
temporalAtRisk.function
temporalAtRisk...
integerise
integerise function...
serr
serr function...
as.ppp.stppp
as...
xvals
xvals function...
discreteWindow.lgcpPredict
discreteWindow...
discreteWindow
discreteWindow function...
print.dump2dir
print...
print.mcmc
print...
as.im.fromXYZ
as...
dump2dir
dump2dir function...
muEst
muEst function...
neattable
neattable function...
multiply.list
multiply...
mcmctrace
mcmctrace function...
varfield.lgcpPredict
varfield...
xvals.default
xvals...
spatialAtRisk.SpatialGridDataFrame
spatialAtRisk...
selectObsWindow.default
selectObsWindow...
hvals
hvals function...
as.im.fromFunction
as...
print.fromFunction
print...
spatialAtRisk.im
spatialAtRisk...
print.stppp
print...
stapp.SpatialPolygonsDataFrame
stapp...
GammafromY
GammafromY function...
summary.lgcpgrid
summary...
temporalAtRisk
temporalAtRisk function...
spatialparsEst
spatialparsEst function...
affine.SpatialPolygonsDataFrame
affine...
toral.cov.mat
toral...
wtowns
Welsh town details: population
as.list.lgcpgrid
as...
as.owin.stapp
as...
circulant.numeric
circulant...
print.gridaverage
print...
computeGradtruncSpatioTemporal
computeGradtruncSpatioTemporal function...
updateAMCMC
updateAMCMC function...
identify.lgcpPredict
identify...
gridav
gridav function...
initialiseAMCMC.andrieuthomsh
initaliseAMCMC...
mcmcpars
mcmcpars function...
print.stapp
print...
rescale.stppp
rescale...
showGrid
showGrid function...
temporalAtRisk.numeric
temporalAtRisk...
GAreturnvalue.MonteCarloAverage
GAreturnvalue...
GFreturnvalue.dump2dir
GFreturnvalue...
ginhomAverage
ginhomAverage function...
identifygrid
identifygrid function...
lgcpgrid
lgcpgrid function...
plot.stppp
plot...
as.owinlist
as...
as.stppp
as...
selectObsWindow.stppp
selectObsWindow...
serr.lgcpPredict
serr...
xvals.lgcpPredict
xvals...
as.stppp.stapp
as...
yvals
yvals function...
getRotation.default
getRotation...
showGrid.lgcpPredict
showGrid...
yvals.lgcpPredict
yvals...
GFfinalise
GFfinalise function...
constanth
constanth function...
getCounts
getCounts function...
zvals
zvals function...
hvals.lgcpPredict
hvals...
computeGradtruncSpatial
computeGradtruncSpatial function...
lgcpPredictSpatialINLA
lgcpPredictSpatialINLA function...
GAfinalise
GAfinalise function...
intens
intens function...
GFupdate
GFupdate function...
inversebase
inversebase function...
lgcpPredictAggregated
lgcpPredictAggregated function...
wpopdata
Population of Welsh counties
updateAMCMC.andrieuthomsh
updateAMCMC...
print.temporalAtRisk
print...
Cvb
Cvb function...
GFfinalise.dump2dir
GFfinalise...
GAupdate.nullAverage
GAupdate...
GFupdate.dump2dir
GFupdate...
GFupdate.nullFunction
GFupdate...
affine.fromFunction
affine...
fftinterpolate.fromXYZ
interpolate...
MALAlgcp
MALAlgcp function...
lambdaEst.stppp
lambdaEst...
lgcpPredictSpatial
lgcpPredictSpatial function...
neigh2D
neigh2D function...
mcmctrace.lgcpPredict
mcmctrace...
plot.lgcpgrid
plot...
spatialAtRisk.bivden
spatialAtRisk...
plot.fromXYZ
plot...
spatialAtRisk.fromXYZ
spatialAtRisk...
setTxtProgressBar2
set the progress bar...
stppp.ppp
stppp...
varfield.lgcpPredictINLA
varfield...
txtProgressBar2
txtProgressBar2
summary.mcmc
summary...
GFinitialise.dump2dir
GFinitialise...
affine.fromSPDF
affine...
as.im.fromSPDF
as...
getRotation.stppp
getRotation...
meanfield.lgcpPredict
meanfield...
quantile.lgcpPredict
quantile...
resetLoop
reset iterator...
spatialAtRisk.function
spatialAtRisk...
xvals.SpatialGridDataFrame
xvals...
varfield
varfield function...
yvals.SpatialGridDataFrame
yvals...
GFinitialise.nullFunction
GFinitialise...
bt.scalar
bt...
initialiseAMCMC
initialiseAMCMC function...
plot.temporalAtRisk
plot...
lgcpgrid.list
lgcpgrid...
paramprecbase
paramprecbase function...
spatialIntensities
spatialIntensities function...
stapp.list
stapp...
stppp
stppp function...
stapp
stapp function...
GFreturnvalue
GFreturnvalue function...
sparsebase
sparsebase function...
zvals.SpatialGridDataFrame
zvals...
eigenfrombase
eigenfrombase function...
yvals.default
yvals...
fftinterpolate
fftinterpolate function...
zvals.default
zvals...
updateAMCMC.constanth
updateAMCMC...
gu
gu function...
is.burnin
is this a burn-in iteration?
lambdaEst
lambdaEst function...
rotmat
rotmat function...
meanfield
meanfield function...
as.array.lgcpgrid
as...
window.lgcpPredict
window...
xvals.fromXYZ
xvals...
add.list
add...
density.stppp
density...
circulant.matrix
circulant...
blockcircbase
blockcircbase function...
exceedProbsAggregated
exceedProbsAggregated function...
expectation
expectation function...
lgcp
lgcp...
setoutput
setoutput function...
lgcpSimSpatial
lgcpSimSpatial function...
nullFunction
nullFunction function...
seintens
seintens function...
lambdaEst.ppp
lambdaEst...
rr.lgcpPredict
rr...
target.and.grad.spatial
target...
GAfinalise.MonteCarloAverage
GAfinalise...
MALAlgcpSpatial
MALAlgcpSpatial function...
andrieuthomsh
andrieuthomsh function...
constantInTime.stppp
constantInTime...
initialiseAMCMC.constanth
initaliseAMCMC...
integerise.stppp
integerise...
spatialAtRisk.default
spatialAtRisk...
constantInTime.numeric
constantInTime...
roteffgain
roteffgain function...