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lgcp (version 1.0)

Log-Gaussian Cox Process

Description

Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process

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Version

Install

install.packages('lgcp')

Monthly Downloads

854

Version

1.0

License

GPL-3

Maintainer

Benjamin Taylor

Last Published

November 23rd, 2012

Functions in lgcp (1.0)

circulant

circulant function...

constantInTime.numeric

constantInTime...

initialiseAMCMC

initialiseAMCMC function...

nullFunction function...

inversebase

inversebase function...

discreteWindow.lgcpPredict

discreteWindow...

zvals.SpatialGridDataFrame

getlgcpPredictSpatialINLA

getlgcpPredictSpatialINLA function...

constantInTime

constantInTime function...

roteffgain

roteffgain function...

paramprec

paramprec function...

KinhomAverage function...

GFinitialise.nullFunction

nullAverage function...

getRotation

getRotation function...

quantile.lgcpgrid

quantile...

GFreturnvalue

GFreturnvalue function...

identifygrid

identifygrid function...

matchcovariance

matchcovariance function...

as.array.lgcpgrid

as...

paramprecbase

paramprecbase function...

neattable

neattable function...

spatialAtRisk.lgcpgrid

temporalAtRisk.function

temporalAtRisk...

GFfinalise

GFfinalise function...

selectObsWindow.stppp

selectObsWindow...

as.fromXYZ.fromFunction

as...

GAfinalise.MonteCarloAverage

MonteCarloAverage function...

fftinterpolate function...

temporalAtRisk

temporalAtRisk function...

quantile.lgcpPredict

quantile...

exceedProbs

exceedProbs function...

mstppp.stppp

mstppp...

spatialAtRisk

spatialAtRisk function...

is.retain

do we retain this iteration?

spatialAtRisk.function

spatialAtRisk...

target.and.grad.spatial

target...

spatialparsEst

spatialparsEst function...

Welsh town details: location

GFinitialise.dump2dir

GFinitialise...

as.owinlist.stapp

as...

plotExceed.lgcpPredict

plotExceed...

getCellCounts

getCellCounts function...

target.and.grad.spatiotemporal

ginhomAverage function...

meanfield.lgcpPredict

meanfield...

GAinitialise.nullAverage

GAinitialise...

initialiseAMCMC.andrieuthomsh

initaliseAMCMC...

as.ppp.mstppp

as...

GFreturnvalue.nullFunction

spatialAtRisk.SpatialPolygonsDataFrame

spatialIntensities.fromSPDF

spatialIntensities...

showGrid.stppp

showGrid...

selectObsWindow.default

expectation function...

computeGradtruncSpatioTemporal

computeGradtruncSpatioTemporal function...

meanfield function...

updateAMCMC.andrieuthomsh

updateAMCMC...

getCounts

getCounts function...

updateAMCMC.constanth

updateAMCMC...

plot.stppp

plot...

SpatialPolygonsDataFrame.stapp

SpatialPolygonsDataFrame...

iterator for MCMC loops...

GFfinalise.nullFunction

MALAlgcpSpatial function...

lgcpPredictSpatialINLA

lgcpPredictSpatialINLA function...

GFreturnvalue.dump2dir

lambdaEst function...

GammafromY

GammafromY function...

gridInWindow function...

spatialAtRisk.default

spatialAtRisk...

GAupdate.MonteCarloAverage

GAfinalise.nullAverage

GAfinalise...

plotExceed

plotExceed function...

wtowns

Welsh town details: population

nextStep

next step of an MCMC chain...

Population of Welsh counties

xvals.SpatialGridDataFrame

lgcpSimSpatial function...

GAreturnvalue.nullAverage

as.owinlist.SpatialPolygonsDataFrame

YfromGamma function...

generic hasNext method...

Extract.stppp

Extract...

blockcircbase

blockcircbase function...

as.SpatialGridDataFrame

mcmctrace function...

computeGradtruncSpatial

computeGradtruncSpatial function...

loop.mcmc

loop over an iterator...

as.SpatialPixelsDataFrame

as...

GAinitialise.MonteCarloAverage

is this a burn-in iteration?

spatialIntensities

spatialIntensities function...

fftinterpolate.fromXYZ

printing progress monitor...

constantInTime.stppp

constantInTime...

updateAMCMC

updateAMCMC function...

lgcpPredict function...

GAinitialise

GAinitialise function...

mstppp.list

mstppp...

selectObsWindow

selectObsWindow function...

text bar progress monitor...

fftinterpolate.fromFunction

fftinterpolate...

setTxtProgressBar2

set the progress bar...

as.SpatialPixelsDataFrame.lgcpgrid

constanth function...

lgcpForecast

lgcpForecast function...

print.gridaverage

print...

mcmcProgressTk

graphical progress monitor...

is.pow2

is...

setoutput

setoutput function...

GFupdate.nullFunction

GFupdate...

expectation.lgcpPredict

eigenfrombase function...

varfield.lgcpPredictINLA

varfield...

mcmcProgressNone

null progress monitor...

mcmctrace.lgcpPredict

mcmctrace...

rgauss

rgauss function...

exceedProbsAggregated

exceedProbsAggregated function...

stapp.SpatialPolygonsDataFrame

GFinitialise function...

GAreturnvalue.MonteCarloAverage

GAreturnvalue...

GAreturnvalue

GAreturnvalue function...

extract.lgcpPredict

extract...

lgcpPredictSpatial

lgcpPredictSpatial function...

temporalAtRisk.numeric

temporalAtRisk...

spatialAtRisk.SpatialGridDataFrame

spatialAtRisk...

yvals.SpatialGridDataFrame

yvals...

sparsebase

sparsebase function...

as.owin.stapp

as...

fftinterpolate.fromSPDF

fftinterpolate...

integerise

integerise function...

as.SpatialGridDataFrame.fromXYZ

as...

meanfield.lgcpPredictINLA

andrieuthomsh function...

spatialAtRisk.fromXYZ

spatialAtRisk...

initialiseAMCMC.constanth

initaliseAMCMC...

spatialIntensities.fromXYZ

spatialIntensities...

affine.SpatialPolygonsDataFrame

affine...

GAfinalise

GAfinalise function...

lgcpPredictAggregated

lgcpPredictAggregated function...

discreteWindow

discreteWindow function...