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lgcp (version 1.0)
Log-Gaussian Cox Process
Description
Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process
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Install
install.packages('lgcp')
Monthly Downloads
1,097
Version
1.0
License
GPL-3
Maintainer
Benjamin Taylor
Last Published
November 23rd, 2012
Functions in lgcp (1.0)
Search functions
circulant
circulant function...
integerise.mstppp
integerise...
GAupdate.nullAverage
GAupdate...
plot.lgcpAutocorr
plot...
.onAttach
.onAttach
constantInTime.numeric
constantInTime...
initialiseAMCMC
initialiseAMCMC function...
d.func
d...
plot.fromSPDF
plot...
nullFunction
nullFunction function...
inversebase
inversebase function...
discreteWindow.lgcpPredict
discreteWindow...
zvals.SpatialGridDataFrame
zvals...
hasNext.iter
hasNext...
plot.mcmcdiag
plot...
GAupdate
GAupdate function...
getlgcpPredictSpatialINLA
getlgcpPredictSpatialINLA function...
constantInTime
constantInTime function...
roteffgain
roteffgain function...
paramprec
paramprec function...
MALAlgcp
MALAlgcp function...
gu
gu function...
KinhomAverage
KinhomAverage function...
GFinitialise.nullFunction
GFinitialise...
yvals.fromXYZ
yvals...
identify.lgcpPredict
identify...
nullAverage
nullAverage function...
getRotation
getRotation function...
quantile.lgcpgrid
quantile...
GFreturnvalue
GFreturnvalue function...
identifygrid
identifygrid function...
matchcovariance
matchcovariance function...
as.array.lgcpgrid
as...
paramprecbase
paramprecbase function...
neattable
neattable function...
spatialAtRisk.lgcpgrid
spatialAtRisk...
plot.lgcpQuantiles
plot...
zvals.default
zvals...
rescale.mstppp
rescale...
zvals
zvals function...
plot.lgcpPredict
plot...
temporalAtRisk.function
temporalAtRisk...
GFfinalise
GFfinalise function...
selectObsWindow.stppp
selectObsWindow...
as.fromXYZ.fromFunction
as...
GAfinalise.MonteCarloAverage
GAfinalise...
lgcpSim
lgcpSim function...
MonteCarloAverage
MonteCarloAverage function...
rr
rr function...
spatialAtRisk.im
spatialAtRisk...
gridav
gridav function...
fftinterpolate
fftinterpolate function...
temporalAtRisk
temporalAtRisk function...
quantile.lgcpPredict
quantile...
exceedProbs
exceedProbs function...
mstppp.stppp
mstppp...
spatialAtRisk
spatialAtRisk function...
is.retain
do we retain this iteration?
spatialAtRisk.function
spatialAtRisk...
target.and.grad.spatial
target...
spatialparsEst
spatialparsEst function...
showGrid
showGrid function...
summary.lgcpgrid
summary...
wtowncoords
Welsh town details: location
GFinitialise.dump2dir
GFinitialise...
as.owinlist.stapp
as...
plotExceed.lgcpPredict
plotExceed...
getCellCounts
getCellCounts function...
mstppp
mstppp function...
extract
extract function...
target.and.grad.spatiotemporal
target...
as.stppp.stapp
as...
lambdaEst.stppp
lambdaEst...
gridfun.lgcpPredict
gridfun...
rotmat
rotmat function...
ginhomAverage
ginhomAverage function...
print.temporalAtRisk
print...
zvals.fromXYZ
zvals...
xvals.fromXYZ
xvals...
meanfield.lgcpPredict
meanfield...
GAinitialise.nullAverage
GAinitialise...
initialiseAMCMC.andrieuthomsh
initaliseAMCMC...
as.ppp.mstppp
as...
GFreturnvalue.nullFunction
GFreturnvalue...
integerise.stppp
integerise...
dump2dir
dump2dir function...
affine.fromFunction
affine...
spatialAtRisk.SpatialPolygonsDataFrame
spatialAtRisk...
bt.scalar
bt...
lambdaEst.ppp
lambdaEst...
print.fromSPDF
print...
lgcpgrid.matrix
lgcpgrid...
stppp.list
stppp...
gridfun
gridfun function...
serr
serr function...
spatialIntensities.fromSPDF
spatialIntensities...
showGrid.stppp
showGrid...
selectObsWindow.default
selectObsWindow...
circulant.numeric
circulant...
affine.fromSPDF
affine...
expectation
expectation function...
computeGradtruncSpatioTemporal
computeGradtruncSpatioTemporal function...
add.list
add...
serr.lgcpPredict
serr...
xvals.default
xvals...
meanfield
meanfield function...
iteration
iteration number...
spatialAtRisk.bivden
spatialAtRisk...
updateAMCMC.andrieuthomsh
updateAMCMC...
getCounts
getCounts function...
updateAMCMC.constanth
updateAMCMC...
plot.stppp
plot...
SpatialPolygonsDataFrame.stapp
SpatialPolygonsDataFrame...
fftgrid
fftgrid function...
gridav.lgcpPredict
gridav...
print.lgcpgrid
print...
as.list.lgcpgrid
as...
varfield.lgcpPredict
varfield...
GFfinalise.dump2dir
GFfinalise...
density.stppp
density...
Extract.mstppp
Extract...
mcmcLoop
iterator for MCMC loops...
GFfinalise.nullFunction
GFfinalise...
is.SPD
is...
yvals
yvals function...
MALAlgcpSpatial
MALAlgcpSpatial function...
lgcpPredictSpatialINLA
lgcpPredictSpatialINLA function...
GFreturnvalue.dump2dir
GFreturnvalue...
print.dump2dir
print...
print.lgcpPredict
print...
as.stppp
as...
lambdaEst
lambdaEst function...
GammafromY
GammafromY function...
print.stapp
print...
muEst
muEst function...
gridInWindow
gridInWindow function...
image.lgcpgrid
image...
lgcpgrid
lgcpgrid function...
spatialAtRisk.default
spatialAtRisk...
GAupdate.MonteCarloAverage
GAupdate...
lgcp
lgcp...
loc2poly
loc2poly function...
GAfinalise.nullAverage
GAfinalise...
plotExceed
plotExceed function...
wtowns
Welsh town details: population
nextStep
next step of an MCMC chain...
GFupdate.dump2dir
GFupdate...
print.fromXYZ
print...
circulant.matrix
circulant...
wpopdata
Population of Welsh counties
xvals.SpatialGridDataFrame
xvals...
print.mcmc
print...
Cvb
Cvb function...
lgcpSimSpatial
lgcpSimSpatial function...
GAreturnvalue.nullAverage
GAreturnvalue...
as.im.fromXYZ
as...
print.stppp
print...
resetLoop
reset iterator...
as.ppp.stppp
as...
toral.cov.mat
toral...
as.owinlist.SpatialPolygonsDataFrame
as...
as.fromXYZ
as...
xvals
xvals function...
YfromGamma
YfromGamma function...
as.im.fromSPDF
as...
stapp
stapp function...
affine.fromXYZ
affine...
intens
intens function...
stppp.ppp
stppp...
hasNext
generic hasNext method...
Extract.stppp
Extract...
blockcircbase
blockcircbase function...
getRotation.stppp
getRotation...
mstppp.ppp
mstppp...
plotExceed.array
plotExceed...
lgcpgrid.list
lgcpgrid...
print.fromFunction
print...
mcmcpars
mcmcpars function...
rr.lgcpPredict
rr...
yvals.default
yvals...
stppp
stppp function...
multiply.list
multiply...
stapp.list
stapp...
intens.lgcpPredict
intens...
as.SpatialGridDataFrame
as...
as.im.fromFunction
as...
mcmctrace
mcmctrace function...
plot.lgcpgrid
plot...
yvals.lgcpPredict
yvals...
computeGradtruncSpatial
computeGradtruncSpatial function...
loop.mcmc
loop over an iterator...
as.SpatialPixelsDataFrame
as...
GAinitialise.MonteCarloAverage
GAinitialise...
plot.mstppp
plot...
is.burnin
is this a burn-in iteration?
spatialIntensities
spatialIntensities function...
fftinterpolate.fromXYZ
interpolate...
window.lgcpPredict
window...
mcmcProgressPrint
printing progress monitor...
constantInTime.stppp
constantInTime...
updateAMCMC
updateAMCMC function...
plot.fromXYZ
plot...
raster.lgcpgrid
raster...
lgcpPredict
lgcpPredict function...
GAinitialise
GAinitialise function...
mstppp.list
mstppp...
selectObsWindow
selectObsWindow function...
lgcpgrid.array
lgcpgrid...
plot.temporalAtRisk
plot...
hvals.lgcpPredict
hvals...
seintens
seintens function...
smultiply.list
smultiply...
hvals
hvals function...
at
at function...
as.owinlist
as...
mcmcProgressTextBar
text bar progress monitor...
fftinterpolate.fromFunction
fftinterpolate...
setTxtProgressBar2
set the progress bar...
as.SpatialPixelsDataFrame.lgcpgrid
as...
varfield
varfield function...
constanth
constanth function...
lgcpForecast
lgcpForecast function...
print.gridaverage
print...
mcmcProgressTk
graphical progress monitor...
is.pow2
is...
setoutput
setoutput function...
GFupdate
GFupdate function...
autocorr
autocorr function...
print.mstppp
print...
txtProgressBar2
txtProgressBar2
lgcppars
lgcppars function...
seintens.lgcpPredict
seintens...
GFupdate.nullFunction
GFupdate...
expectation.lgcpPredict
expectation...
getRotation.default
getRotation...
eigenfrombase
eigenfrombase function...
varfield.lgcpPredictINLA
varfield...
mcmcProgressNone
null progress monitor...
mcmctrace.lgcpPredict
mcmctrace...
rgauss
rgauss function...
exceedProbsAggregated
exceedProbsAggregated function...
neigh2D
neigh2D function...
xvals.lgcpPredict
xvals...
stapp.SpatialPolygonsDataFrame
stapp...
showGrid.default
showGrid...
showGrid.lgcpPredict
showGrid...
rescale.stppp
rescale...
thetaEst
thetaEst function...
affine.stppp
affine...
GFinitialise
GFinitialise function...
GAreturnvalue.MonteCarloAverage
GAreturnvalue...
GAreturnvalue
GAreturnvalue function...
extract.lgcpPredict
extract...
lgcpPredictSpatial
lgcpPredictSpatial function...
temporalAtRisk.numeric
temporalAtRisk...
spatialAtRisk.SpatialGridDataFrame
spatialAtRisk...
yvals.SpatialGridDataFrame
yvals...
sparsebase
sparsebase function...
as.owin.stapp
as...
fftinterpolate.fromSPDF
fftinterpolate...
integerise
integerise function...
as.SpatialGridDataFrame.fromXYZ
as...
meanfield.lgcpPredictINLA
meanfield...
summary.mcmc
summary...
andrieuthomsh
andrieuthomsh function...
spatialAtRisk.fromXYZ
spatialAtRisk...
initialiseAMCMC.constanth
initaliseAMCMC...
spatialIntensities.fromXYZ
spatialIntensities...
affine.SpatialPolygonsDataFrame
affine...
GAfinalise
GAfinalise function...
lgcpPredictAggregated
lgcpPredictAggregated function...
discreteWindow
discreteWindow function...