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lgcp (version 1.01)
Log-Gaussian Cox Process
Description
Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process
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Install
install.packages('lgcp')
Monthly Downloads
1,097
Version
1.01
License
GPL-3
Maintainer
Benjamin Taylor
Last Published
January 23rd, 2013
Functions in lgcp (1.01)
Search functions
GFfinalise.nullFunction
GFfinalise...
circulant
circulant function...
GAreturnvalue.nullAverage
GAreturnvalue...
GAinitialise.MonteCarloAverage
GAinitialise...
GFupdate
GFupdate function...
gridav
gridav function...
SpatialPolygonsDataFrame.stapp
SpatialPolygonsDataFrame...
plot.lgcpPredict
plot...
spatialIntensities.fromXYZ
spatialIntensities...
yvals
yvals function...
lgcppars
lgcppars function...
constantInTime.numeric
constantInTime...
lgcpPredictAggregated
lgcpPredictAggregated function...
spatialAtRisk.lgcpgrid
spatialAtRisk...
quantile.lgcpgrid
quantile...
spatialAtRisk.SpatialGridDataFrame
spatialAtRisk...
varfield.lgcpPredictINLA
varfield...
as.stppp
as...
getCellCounts
getCellCounts function...
GAfinalise
GAfinalise function...
loop.mcmc
loop over an iterator...
mcmctrace
mcmctrace function...
GFinitialise.dump2dir
GFinitialise...
mstppp.list
mstppp...
mcmcProgressPrint
printing progress monitor...
xvals
xvals function...
selectObsWindow
selectObsWindow function...
lambdaEst.stppp
lambdaEst...
meanfield.lgcpPredictINLA
meanfield...
lgcpPredictSpatial
lgcpPredictSpatial function...
window.lgcpPredict
window...
zvals.default
zvals...
at
at function...
computeGradtruncSpatioTemporal
computeGradtruncSpatioTemporal function...
expectation.lgcpPredict
expectation...
GAfinalise.MonteCarloAverage
GAfinalise...
hasNext
generic hasNext method...
initialiseAMCMC
initialiseAMCMC function...
spatialAtRisk.fromXYZ
spatialAtRisk...
serr
serr function...
showGrid.stppp
showGrid...
stppp.ppp
stppp...
rgauss
rgauss function...
constantInTime.stppp
constantInTime...
temporalAtRisk
temporalAtRisk function...
serr.lgcpPredict
serr...
exceedProbsAggregated
exceedProbsAggregated function...
Extract.stppp
Extract...
GAupdate.nullAverage
GAupdate...
GAupdate
GAupdate function...
updateAMCMC
updateAMCMC function...
target.and.grad.spatiotemporal
target...
is.pow2
is...
affine.fromSPDF
affine...
GammafromY
GammafromY function...
GFfinalise.dump2dir
GFfinalise...
gridfun
gridfun function...
summary.lgcpgrid
summary...
as.SpatialGridDataFrame
as...
summary.mcmc
summary...
print.gridaverage
print...
constanth
constanth function...
expectation
expectation function...
spatialIntensities.fromSPDF
spatialIntensities...
extract
extract function...
selectObsWindow.default
selectObsWindow...
varfield
varfield function...
mstppp.stppp
mstppp...
lgcpSimSpatial
lgcpSimSpatial function...
smultiply.list
smultiply...
GAinitialise.nullAverage
GAinitialise...
as.im.fromFunction
as...
GAupdate.MonteCarloAverage
GAupdate...
getlgcpPredictSpatialINLA
getlgcpPredictSpatialINLA function...
print.mstppp
print...
lgcpgrid
lgcpgrid function...
constantInTime
constantInTime function...
GFupdate.dump2dir
GFupdate...
lgcp
lgcp...
MALAlgcp
MALAlgcp function...
gridfun.lgcpPredict
gridfun...
lgcpgrid.array
lgcpgrid...
as.owinlist.stapp
as...
paramprecbase
paramprecbase function...
stapp
stapp function...
affine.fromFunction
affine...
inversebase
inversebase function...
autocorr
autocorr function...
spatialAtRisk.bivden
spatialAtRisk...
intens
intens function...
intens.lgcpPredict
intens...
mcmctrace.lgcpPredict
mcmctrace...
integerise
integerise function...
txtProgressBar2
txtProgressBar2
print.stppp
print...
spatialAtRisk.default
spatialAtRisk...
exceedProbs
exceedProbs function...
fftinterpolate
fftinterpolate function...
dump2dir
dump2dir function...
xvals.SpatialGridDataFrame
xvals...
setTxtProgressBar2
set the progress bar...
spatialIntensities
spatialIntensities function...
mstppp
mstppp function...
Extract.mstppp
Extract...
GAinitialise
GAinitialise function...
is.burnin
is this a burn-in iteration?
updateAMCMC.andrieuthomsh
updateAMCMC...
hasNext.iter
hasNext...
lgcpgrid.matrix
lgcpgrid...
neattable
neattable function...
print.stapp
print...
print.mcmc
print...
spatialAtRisk
spatialAtRisk function...
nullAverage
nullAverage function...
initialiseAMCMC.andrieuthomsh
initaliseAMCMC...
nullFunction
nullFunction function...
lgcpForecast
lgcpForecast function...
selectObsWindow.stppp
selectObsWindow...
lgcpSim
lgcpSim function...
fftinterpolate.fromFunction
fftinterpolate...
print.fromXYZ
print...
showGrid.lgcpPredict
showGrid...
temporalAtRisk.function
temporalAtRisk...
is.retain
do we retain this iteration?
print.lgcpgrid
print...
yvals.SpatialGridDataFrame
yvals...
varfield.lgcpPredict
varfield...
affine.SpatialPolygonsDataFrame
affine...
GFreturnvalue.dump2dir
GFreturnvalue...
as.owinlist
as...
discreteWindow.lgcpPredict
discreteWindow...
extract.lgcpPredict
extract...
as.array.lgcpgrid
as...
as.im.fromSPDF
as...
getCounts
getCounts function...
integerise.mstppp
integerise...
eigenfrombase
eigenfrombase function...
lgcpPredictSpatialINLA
lgcpPredictSpatialINLA function...
gridav.lgcpPredict
gridav...
YfromGamma
YfromGamma function...
is.SPD
is...
meanfield
meanfield function...
plot.fromSPDF
plot...
hvals
hvals function...
plot.lgcpgrid
plot...
spatialAtRisk.function
spatialAtRisk...
GFreturnvalue.nullFunction
GFreturnvalue...
muEst
muEst function...
print.temporalAtRisk
print...
GAfinalise.nullAverage
GAfinalise...
raster.lgcpgrid
raster...
MALAlgcpSpatial
MALAlgcpSpatial function...
as.stppp.stapp
as...
showGrid.default
showGrid...
updateAMCMC.constanth
updateAMCMC...
sparsebase
sparsebase function...
GFfinalise
GFfinalise function...
xvals.fromXYZ
xvals...
stppp.list
stppp...
showGrid
showGrid function...
wtowncoords
Welsh town details: location
rotmat
rotmat function...
as.list.lgcpgrid
as...
density.stppp
density...
mcmcLoop
iterator for MCMC loops...
nextStep
next step of an MCMC chain...
mcmcProgressTextBar
text bar progress monitor...
print.fromFunction
print...
MonteCarloAverage
MonteCarloAverage function...
as.owinlist.SpatialPolygonsDataFrame
as...
KinhomAverage
KinhomAverage function...
as.SpatialPixelsDataFrame
as...
as.ppp.stppp
as...
as.fromXYZ.fromFunction
as...
GAreturnvalue.MonteCarloAverage
GAreturnvalue...
getRotation.stppp
getRotation...
loc2poly
loc2poly function...
mcmcpars
mcmcpars function...
andrieuthomsh
andrieuthomsh function...
zvals.fromXYZ
zvals...
fftinterpolate.fromSPDF
fftinterpolate...
identify.lgcpPredict
identify...
print.dump2dir
print...
mcmcProgressNone
null progress monitor...
discreteWindow
discreteWindow function...
matchcovariance
matchcovariance function...
gridInWindow
gridInWindow function...
multiply.list
multiply...
plot.mstppp
plot...
plot.stppp
plot...
rescale.stppp
rescale...
resetLoop
reset iterator...
lambdaEst
lambdaEst function...
plotExceed.array
plotExceed...
lgcpgrid.list
lgcpgrid...
computeGradtruncSpatial
computeGradtruncSpatial function...
zvals.SpatialGridDataFrame
zvals...
as.SpatialPixelsDataFrame.lgcpgrid
as...
plot.mcmcdiag
plot...
rr.lgcpPredict
rr...
mstppp.ppp
mstppp...
bt.scalar
bt...
getRotation.default
getRotation...
d.func
d...
temporalAtRisk.numeric
temporalAtRisk...
identifygrid
identifygrid function...
plot.fromXYZ
plot...
iteration
iteration number...
toral.cov.mat
toral...
xvals.default
xvals...
lgcpPredict
lgcpPredict function...
quantile.lgcpPredict
quantile...
print.lgcpPredict
print...
yvals.lgcpPredict
yvals...
roteffgain
roteffgain function...
print.fromSPDF
print...
thetaEst
thetaEst function...
mcmcProgressTk
graphical progress monitor...
zvals
zvals function...
as.SpatialGridDataFrame.fromXYZ
as...
lambdaEst.ppp
lambdaEst...
stppp
stppp function...
blockcircbase
blockcircbase function...
fftinterpolate.fromXYZ
interpolate...
getRotation
getRotation function...
ginhomAverage
ginhomAverage function...
GFupdate.nullFunction
GFupdate...
as.owin.stapp
as...
GFinitialise.nullFunction
GFinitialise...
affine.fromXYZ
affine...
as.im.fromXYZ
as...
.onAttach
.onAttach
GAreturnvalue
GAreturnvalue function...
add.list
add...
image.lgcpgrid
image...
circulant.numeric
circulant...
Cvb
Cvb function...
gu
gu function...
fftgrid
fftgrid function...
hvals.lgcpPredict
hvals...
spatialparsEst
spatialparsEst function...
target.and.grad.spatial
target...
neigh2D
neigh2D function...
paramprec
paramprec function...
plot.lgcpAutocorr
plot...
yvals.default
yvals...
integerise.stppp
integerise...
setoutput
setoutput function...
xvals.lgcpPredict
xvals...
plot.temporalAtRisk
plot...
as.fromXYZ
as...
GFinitialise
GFinitialise function...
as.ppp.mstppp
as...
rr
rr function...
plot.lgcpQuantiles
plot...
seintens.lgcpPredict
seintens...
spatialAtRisk.im
spatialAtRisk...
yvals.fromXYZ
yvals...
wpopdata
Population of Welsh counties
wtowns
Welsh town details: population
GFreturnvalue
GFreturnvalue function...
affine.stppp
affine...
plotExceed
plotExceed function...
plotExceed.lgcpPredict
plotExceed...
rescale.mstppp
rescale...
spatialAtRisk.SpatialPolygonsDataFrame
spatialAtRisk...
stapp.list
stapp...
seintens
seintens function...
meanfield.lgcpPredict
meanfield...
initialiseAMCMC.constanth
initaliseAMCMC...
stapp.SpatialPolygonsDataFrame
stapp...
circulant.matrix
circulant...