⚠️There's a newer version (1.8) of this package.Take me there.

lgcp (version 1.01)

Log-Gaussian Cox Process

Description

Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process

Copy Link

Version

Install

install.packages('lgcp')

Monthly Downloads

822

Version

1.01

License

GPL-3

Maintainer

Benjamin Taylor

Last Published

January 23rd, 2013

Functions in lgcp (1.01)

GFfinalise.nullFunction

GFfinalise...

circulant

circulant function...

GAreturnvalue.nullAverage

GAreturnvalue...

GAinitialise.MonteCarloAverage

SpatialPolygonsDataFrame.stapp

SpatialPolygonsDataFrame...

plot.lgcpPredict

plot...

spatialIntensities.fromXYZ

spatialIntensities...

constantInTime.numeric

constantInTime...

lgcpPredictAggregated

lgcpPredictAggregated function...

spatialAtRisk.lgcpgrid

spatialAtRisk...

quantile.lgcpgrid

quantile...

spatialAtRisk.SpatialGridDataFrame

spatialAtRisk...

varfield.lgcpPredictINLA

getCellCounts function...

GAfinalise

GAfinalise function...

loop.mcmc

loop over an iterator...

mcmctrace

mcmctrace function...

GFinitialise.dump2dir

printing progress monitor...

xvals

xvals function...

selectObsWindow

selectObsWindow function...

lambdaEst.stppp

lambdaEst...

meanfield.lgcpPredictINLA

meanfield...

lgcpPredictSpatial

lgcpPredictSpatial function...

computeGradtruncSpatioTemporal

computeGradtruncSpatioTemporal function...

expectation.lgcpPredict

expectation...

GAfinalise.MonteCarloAverage

GAfinalise...

hasNext

generic hasNext method...

initialiseAMCMC

initialiseAMCMC function...

spatialAtRisk.fromXYZ

temporalAtRisk function...

serr.lgcpPredict

serr...

exceedProbsAggregated

exceedProbsAggregated function...

updateAMCMC function...

target.and.grad.spatiotemporal

GammafromY function...

as.SpatialGridDataFrame

constanth function...

expectation

expectation function...

spatialIntensities.fromSPDF

spatialIntensities...

extract

extract function...

selectObsWindow.default

lgcpSimSpatial function...

smultiply.list

smultiply...

GAinitialise.nullAverage

GAinitialise...

as.im.fromFunction

as...

GAupdate.MonteCarloAverage

GAupdate...

getlgcpPredictSpatialINLA

getlgcpPredictSpatialINLA function...

constantInTime function...

paramprecbase function...

inversebase function...

mcmctrace.lgcpPredict

mcmctrace...

integerise

integerise function...

txtProgressBar2

print.stppp

print...

spatialAtRisk.default

spatialAtRisk...

exceedProbs

exceedProbs function...

fftinterpolate

fftinterpolate function...

dump2dir

dump2dir function...

xvals.SpatialGridDataFrame

xvals...

setTxtProgressBar2

set the progress bar...

spatialIntensities

spatialIntensities function...

GAinitialise function...

is.burnin

is this a burn-in iteration?

updateAMCMC.andrieuthomsh

neattable function...

spatialAtRisk function...

nullAverage

nullAverage function...

initialiseAMCMC.andrieuthomsh

initaliseAMCMC...

nullFunction

nullFunction function...

lgcpForecast

lgcpForecast function...

selectObsWindow.stppp

selectObsWindow...

lgcpSim

lgcpSim function...

fftinterpolate.fromFunction

temporalAtRisk.function

temporalAtRisk...

is.retain

do we retain this iteration?

print.lgcpgrid

print...

yvals.SpatialGridDataFrame

yvals...

varfield.lgcpPredict

varfield...

affine.SpatialPolygonsDataFrame

affine...

GFreturnvalue.dump2dir

GFreturnvalue...

as.owinlist

as...

discreteWindow.lgcpPredict

getCounts function...

integerise.mstppp

integerise...

eigenfrombase

eigenfrombase function...

lgcpPredictSpatialINLA

lgcpPredictSpatialINLA function...

gridav.lgcpPredict

gridav...

YfromGamma

YfromGamma function...

is.SPD

is...

meanfield

meanfield function...

spatialAtRisk.function

spatialAtRisk...

GFreturnvalue.nullFunction

GAfinalise.nullAverage

MALAlgcpSpatial function...

updateAMCMC.constanth

updateAMCMC...

sparsebase

sparsebase function...

GFfinalise

GFfinalise function...

Welsh town details: location

iterator for MCMC loops...

nextStep

next step of an MCMC chain...

mcmcProgressTextBar

text bar progress monitor...

print.fromFunction

print...

MonteCarloAverage

MonteCarloAverage function...

as.owinlist.SpatialPolygonsDataFrame

as...

KinhomAverage

KinhomAverage function...

as.SpatialPixelsDataFrame

as...

as.ppp.stppp

as...

as.fromXYZ.fromFunction

as...

GAreturnvalue.MonteCarloAverage

andrieuthomsh function...

zvals.fromXYZ

zvals...

fftinterpolate.fromSPDF

null progress monitor...

discreteWindow

discreteWindow function...

matchcovariance

matchcovariance function...

gridInWindow

gridInWindow function...

lambdaEst function...

computeGradtruncSpatial

computeGradtruncSpatial function...

zvals.SpatialGridDataFrame

zvals...

as.SpatialPixelsDataFrame.lgcpgrid

temporalAtRisk.numeric

temporalAtRisk...

identifygrid

identifygrid function...

lgcpPredict function...

roteffgain function...

graphical progress monitor...

zvals

zvals function...

as.SpatialGridDataFrame.fromXYZ

blockcircbase function...

fftinterpolate.fromXYZ

interpolate...

getRotation

getRotation function...

ginhomAverage

ginhomAverage function...

GFupdate.nullFunction

GFupdate...

as.owin.stapp

as...

GFinitialise.nullFunction

GAreturnvalue function...

spatialparsEst function...

target.and.grad.spatial

paramprec function...

setoutput function...

GFinitialise function...

Population of Welsh counties

wtowns

Welsh town details: population

GFreturnvalue

GFreturnvalue function...

affine.stppp

affine...

plotExceed

plotExceed function...

plotExceed.lgcpPredict

plotExceed...

rescale.mstppp

rescale...

spatialAtRisk.SpatialPolygonsDataFrame

meanfield.lgcpPredict

meanfield...

initialiseAMCMC.constanth

initaliseAMCMC...

stapp.SpatialPolygonsDataFrame

stapp...

circulant.matrix

circulant...