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lgcp (version 1.3-1)
Log-Gaussian Cox Process
Description
Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process
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Install
install.packages('lgcp')
Monthly Downloads
1,170
Version
1.3-1
License
GPL-3
Maintainer
Benjamin Taylor
Last Published
June 11th, 2013
Functions in lgcp (1.3-1)
Search all functions
print.fromSPDF
print.fromSPDF function
smultiply.list
smultiply.list function
spatialparsEst
spatialparsEst function
toral.cov.mat
toral.cov.mat function
target.and.grad.spatialPlusPars
target.and.grad.spatialPlusPars function
xvals.default
xvals.default function
spatialAtRisk.im
spatialAtRisk.im function
varfield.lgcpPredict
varfield.lgcpPredict function
EvaluatePrior
EvaluatePrior function
add.list
add.list function
GFinitialise
GFinitialise function
MonteCarloAverage
MonteCarloAverage function
yvals.lgcpPredict
yvals.lgcpPredict function
computeGradtruncSpatioTemporal
computeGradtruncSpatioTemporal function
GFfinalise
GFfinalise function
showGrid.stppp
showGrid.stppp function
constantInTime.numeric
constantInTime.numeric function
target.and.grad.MultitypespatialPlusPars
target.and.grad.MultitypespatialPlusPars function
xvals
xvals function
grid2spix
grid2spix function
lgcpPrior
lgcpPrior function
lgcpPredictMultitypeSpatialPlusPars
lgcpPredictMultitypeSpatialPlusPars function
GPdrv
GPdrv function
K.val
K.val function
LogGaussianPrior
LogGaussianPrior function
seintens
seintens function
GAupdate.MonteCarloAverage
GAupdate.MonteCarloAverage function
zvals.SpatialGridDataFrame
zvals.SpatialGridDataFrame function
spatialAtRisk.SpatialPolygonsDataFrame
spatialAtRisk.SpatialPolygonsDataFrame function
fftinterpolate.fromSPDF
fftinterpolate.fromSPDF function
getup
getup function
as.im.fromFunction
as.im.fromFunction function
yvals.default
yvals.default function
rescale.stppp
rescale.stppp function
inversebase
inversebase function
GAupdate.nullAverage
GAupdate.nullAverage function
MALAlgcpMultitypeSpatial.PlusPars
MALAlgcpMultitypeSpatial.PlusPars function
print.temporalAtRisk
print.temporalAtRisk function
print.mstppp
print.mstppp function
spatialIntensities.fromSPDF
spatialIntensities.fromSPDF function
serr.lgcpPredict
serr.lgcpPredict function
aggCovInfo.ArealWeightedSum
aggCovInfo.ArealWeightedSum function
constantInTime.stppp
constantInTime.stppp function
varfield
varfield function
selectObsWindow.default
selectObsWindow.default function
spatialAtRisk.SpatialGridDataFrame
spatialAtRisk.SpatialGridDataFrame function
selectObsWindow
selectObsWindow function
spatialAtRisk
spatialAtRisk function
xvals.fromXYZ
xvals.fromXYZ function
priorpost
priorpost function
stapp.list
stapp.list function
CovFunction.function
CovFunction.function function
extract
extract function
blockcircbase
blockcircbase function
spatialAtRisk.bivden
spatialAtRisk.bivden function
assigninterp
assigninterp function
as.ppp.stppp
as.ppp.stppp function
bt.scalar
bt.scalar function
tempRaster
tempRaster function
cov.interp.fft
cov.interp.fft function
updateAMCMC
updateAMCMC function
samplePosterior
samplePosterior function
window.lgcpPredict
window.lgcpPredict function
target.and.grad.AggregateSpatialPlusPars
target.and.grad.AggregateSpatialPlusPars function
constanth
constanth function
condProbs
condProbs function
spatialAtRisk.lgcpgrid
spatialAtRisk.lgcpgrid function
etavals
etavals function
fftinterpolate.fromFunction
fftinterpolate.fromFunction function
lgcpPredictSpatioTemporalPlusPars
lgcpPredictSpatioTemporalPlusPars function
Cvb
Cvb function
MALAlgcpAggregateSpatial.PlusPars
MALAlgcpAggregateSpatial.PlusPars function
identify.lgcpPredict
identify.lgcpPredict function
autocorrMultitype
autocorrMultitype function
as.im.fromSPDF
as.im.fromSPDF function
getCellCounts
getCellCounts function
lgcpSim
lgcpSim function
stapp
stapp function
updateAMCMC.andrieuthomsh
updateAMCMC.andrieuthomsh function
fftmultiply
fftmultiply function
gridfun.lgcpPredict
gridfun.lgcpPredict function
guessinterp
guessinterp function
print.lgcpgrid
print.lgcpgrid function
CovParameters
CovParameters function
GammafromY
GammafromY function
grid2spoly
grid2spoly function
Extract.stppp
Extract.stppp function
lgcpPredictSpatialPlusPars
lgcpPredictSpatialPlusPars function
ginhomAverage
ginhomAverage function
print.stppp
print.stppp function
wtowncoords
Welsh town details: location
GAfinalise.MonteCarloAverage
GAfinalise.MonteCarloAverage function
GAupdate
GAupdate function
minimum.contrast
minimum.contrast function
lambdaEst
lambdaEst function
integerise
integerise function
affine.fromXYZ
affine.fromXYZ function
setoutput
setoutput function
lgcpSimSpatial
lgcpSimSpatial function
at
at function
GFinitialise.dump2dir
GFinitialise.dump2dir function
intens.lgcpSimSpatialPlusParameters
intens.lgcpSimSpatialPlusParameters function
GAinitialise
GAinitialise function
showGrid
showGrid function
g.diff.single
g.diff.single function
selectObsWindow.stppp
selectObsWindow.stppp function
textsummary
textsummary function
spatialAtRisk.fromXYZ
spatialAtRisk.fromXYZ function
getRotation.stppp
getRotation.stppp function
lambdaEst.ppp
lambdaEst.ppp function
GPlist2array
GPlist2array function
mcmcLoop
iterator for MCMC loops
summary.lgcpgrid
summary.lgcpgrid function
GPdrv2
GPdrv2 function
updateAMCMC.constanth
updateAMCMC.constanth function
RandomFieldsCovFct
RandomFieldsCovFct function
yvals.fromXYZ
yvals.fromXYZ function
PriorSpec.list
PriorSpec.list function
affine.fromFunction
affine.fromFunction function
MALAlgcpSpatial
MALAlgcpSpatial function
checkObsWin
checkObsWin function
exponentialCovFct
exponentialCovFct function
chooseCellwidth
chooseCellwidth function
mcmcProgressTextBar
text bar progress monitor
hvals
hvals function
lambdaEst.stppp
lambdaEst.stppp function
plot.fromSPDF
plot.fromSPDF function
GFinitialise.nullFunction
GFinitialise.nullFunction function
lgcpForecast
lgcpForecast function
mstppp.stppp
mstppp.stppp function
aggCovInfo.Majority
aggCovInfo.Majority function
meanfield
meanfield function
spatialIntensities.fromXYZ
spatialIntensities.fromXYZ function
as.stppp
as.stppp function
aggCovInfo.ArealWeightedMean
aggCovInfo.ArealWeightedMean function
print.fromXYZ
print.fromXYZ function
eigenfrombase
eigenfrombase function
getRotation.default
getRotation.default function
as.list.lgcpgrid
as.list.lgcpgrid function
quantile.lgcpgrid
quantile.lgcpgrid function
as.ppp.mstppp
as.ppp.mstppp function
yvals.SpatialGridDataFrame
yvals.SpatialGridDataFrame function
GFupdate
GFupdate function
getlgcpPredictSpatialINLA
getlgcpPredictSpatialINLA function
lgcpgrid.matrix
lgcpgrid.matrix function
rr.lgcpPredict
rr.lgcpPredict function
circulant.matrix
circulant.matrix function
segProbs
segProbs function
expectation.lgcpPredict
expectation.lgcpPredict function
K.diff.single
K.diff.single function
constantInTime
constantInTime function
GAreturnvalue.MonteCarloAverage
GAreturnvalue.MonteCarloAverage function
clearinterp
clearinterp function
plot.lgcpAutocorr
plot.lgcpAutocorr function
transred
transred function
GFreturnvalue
GFreturnvalue function
quantile.lgcpPredict
quantile.lgcpPredict function
MALAlgcpSpatial.PlusPars
MALAlgcpSpatial.PlusPars function
GFfinalise.dump2dir
GFfinalise.dump2dir function
is.SPD
is.SPD function
getinterp
getinterp function
as.SpatialGridDataFrame
as.SpatialGridDataFrame function
GFreturnvalue.nullFunction
GFreturnvalue.nullFunction function
MALAlgcp
MALAlgcp function
BetaParameters
BetaParameters function
aggCovInfo
aggCovInfo function
SpikedExponentialCovFct
SpikedExponentialCovFct function
grid2spdf
grid2spdf function
touchingowin
touchingowin function
d.func
d.func function
dump2dir
dump2dir function
Extract.mstppp
Extract.mstppp function
temporalAtRisk.numeric
temporalAtRisk.numeric function
integerise.stppp
integerise.stppp function
K.u
K.u function
GAinitialise.nullAverage
GAinitialise.nullAverage function
MALAlgcpSpatioTemporal.PlusPars
MALAlgcpSpatioTemporal.PlusPars function
GAinitialise.MonteCarloAverage
GAinitialise.MonteCarloAverage function
as.fromXYZ
as.fromXYZ function
aggregateformulaList
aggregateformulaList function
C.diff.single.im
C.diff.single.im function
lgcpPredict
lgcpPredict function
getCovParameters.list
getCovParameters.list function
postcov.lgcpPredictAggregateSpatialPlusParameters
postcov.lgcpPredictAggregateSpatialPlusParameters function
seintens.lgcpPredict
seintens.lgcpPredict function
getRotation
getRotation function
mcmctrace.lgcpPredict
mcmctrace.lgcpPredict function
formulaList
formulaList function
YfromGamma
YfromGamma function
lgcpgrid
lgcpgrid function
mstppp
mstppp function
autocorr
autocorr function
txtProgressBar2
A text progress bar with label
yvals
yvals function
getCovParameters
getCovParameters function
getZmats
getZmats function
target.and.grad.spatiotemporal
target.and.grad.spatiotemporal function
density.stppp
density.stppp function
andrieuthomsh
andrieuthomsh function
grid2spts
grid2spts function
as.owinlist.SpatialPolygonsDataFrame
as.owinlist.SpatialPolygonsDataFrame function
plot.mcmcdiag
plot.mcmcdiag function
affine.stppp
affine.stppp function
parsummary
parsummary function
gridav
gridav function
lgcpSimSpatialCovariates
lgcpSimSpatialCovariates function
getpolyol
getpolyol function
GFreturnvalue.dump2dir
GFreturnvalue.dump2dir function
initialiseAMCMC.constanth
initaliseAMCMC.constanth function
image.lgcpgrid
image.lgcpgrid function
PriorSpec
PriorSpec function
interptypes
interptypes function
lgcpPredictSpatial
lgcpPredictSpatial function
GFfinalise.nullFunction
GFfinalise.nullFunction function
stppp.ppp
stppp.ppp function
hasNext
generic hasNext method
GAfinalise
GAfinalise function
intens.lgcpPredict
intens.lgcpPredict function
lgcp
lgcp
hasNext.iter
hasNext.iter function
fftinterpolate.fromXYZ
interpolate.fromXYZ function
lgcpPredictAggregated
lgcpPredictAggregated function
muEst
muEst function
mcmcProgressPrint
printing progress monitor
paramprecbase
paramprecbase function
lgcpPredictSpatialINLA
lgcpPredictSpatialINLA function
wtowns
Welsh town details: population
mcmcpars
mcmcpars function
paramprec
paramprec function
extract.lgcpPredict
extract.lgcpPredict function
as.array.lgcpgrid
as.array.lgcpgrid function
plot.lgcpgrid
plot.lgcpgrid function
postcov
postcov function
initialiseAMCMC.andrieuthomsh
initaliseAMCMC.andrieuthomsh function
lgcpgrid.array
lgcpgrid.array function
GFupdate.dump2dir
GFupdate.dump2dir function
as.stppp.stapp
as.stppp.stapp function
as.owinlist
as.owinlist function
circulant.numeric
circulant.numeric function
GaussianPrior
GaussianPrior function
as.owinlist.stapp
as.owinlist.stapp function
gridInWindow
gridInWindow function
getCovParameters.GPrealisation
getCovParameters.GPrealisation function
plotit
plotit function
is.burnin
is this a burn-in iteration?
print.stapp
print.stapp function
identifygrid
identifygrid function
stppp.list
stppp.list function
getZmat
getZmat function
integerise.mstppp
integerise.mstppp function
getLHSformulaList
getLHSformulaList function
print.lgcpPredict
print.lgcpPredict function
lgcp-package
lgcp
target.and.grad.SpatioTemporalPlusPars
target.and.grad.SpatioTemporalPlusPars function
numCases
numCases function
transblue
transblue function
plotExceed
plotExceed function
postcov.lgcpPredictSpatioTemporalPlusParameters
postcov.lgcpPredictSpatioTemporalPlusParameters function
lgcpgrid.list
lgcpgrid.list function
my.ginhomAverage
my.ginhomAverage function
rr
rr function
initialiseAMCMC
initialiseAMCMC function
betavals
betavals function
summary.mcmc
summary.mcmc function
spatialAtRisk.function
spatialAtRisk.function function
plot.mstppp
plot.mstppp function
mcmcProgressNone
null progress monitor
showGrid.lgcpPredict
showGrid.lgcpPredict function
matchcovariance
matchcovariance function
stppp
stppp function
affine.SpatialPolygonsDataFrame
affine.SpatialPolygonsDataFrame function
GPrealisation
GPrealisation function
sparsebase
sparsebase function
stGPrealisation
stGPrealisation function
aggregateCovariateInfo
aggregateCovariateInfo function
neattable
neattable function
spatialIntensities
spatialIntensities function
zvals.fromXYZ
zvals.fromXYZ function
iteration
iteration number
print.gridaverage
print.gridaverage function
mstppp.list
mstppp.list function
expectation.lgcpPredictSpatialOnlyPlusParameters
expectation.lgcpPredictSpatialOnlyPlusParameters function
exceedProbsAggregated
exceedProbsAggregated function
postcov.lgcpPredictSpatialOnlyPlusParameters
postcov.lgcpPredictSpatialOnlyPlusParameters function
plot.lgcpQuantiles
plot.lgcpQuantiles function
mstppp.ppp
mstppp.ppp function
expectation
expectation function
GAreturnvalue.nullAverage
GAreturnvalue.nullAverage function##'
gridav.lgcpPredict
gridav.lgcpPredict function
as.fromXYZ.fromFunction
as.fromXYZ.fromFunction function
spatialAtRisk.default
spatialAtRisk.default function
intens.lgcpSimMultitypeSpatialPlusParameters
intens.lgcpSimMultitypeSpatialPlusParameters function
postcov.lgcpPredictMultitypeSpatialPlusParameters
postcov.lgcpPredictMultitypeSpatialPlusParameters function
lgcppars
lgcppars function
exceedProbs
exceedProbs function
as.SpatialPixelsDataFrame.lgcpgrid
as.SpatialPixelsDataFrame.lgcpgrid function
lgcpPredictAggregateSpatialPlusPars
lgcpPredictAggregateSpatialPlusPars function
meanfield.lgcpPredictINLA
meanfield.lgcpPredictINLA function
transgreen
transgreen function
osppp2merc
osppp2merc function
rotmat
rotmat function
lgcpbayes
lgcpbayes function
getCounts
getCounts function
plot.lgcpZmat
plot.lgcpZmat function
fftgrid
fftgrid function
SpatialPolygonsDataFrame.stapp
SpatialPolygonsDataFrame.stapp function
as.im.fromXYZ
as.im.fromXYZ function
nullAverage
nullAverage function
lgcpSimMultitypeSpatialCovariates
lgcpSimMultitypeSpatialCovariates function
plot.lgcpPredict
plot.lgcpPredict function
hvals.lgcpPredict
hvals.lgcpPredict function
osppp2latlon
osppp2latlon function
plotExceed.lgcpPredict
plotExceed.lgcpPredict function
target.and.grad.spatial
target.and.grad.spatial function
nullFunction
nullFunction function
covEffects
covEffects function
meanfield.lgcpPredict
meanfield.lgcpPredict function
GFupdate.nullFunction
GFupdate.nullFunction function
discreteWindow
discreteWindow function
plot.fromXYZ
plot.fromXYZ function
as.SpatialPixelsDataFrame
as.SpatialPixelsDataFrame function
ltar
ltar function
GPdrv2_Multitype
GPdrv2_Multitype function
genFFTgrid
genFFTgrid function
plot.temporalAtRisk
plot.temporalAtRisk function
setTxtProgressBar2
set the progress bar
gOverlay
gOverlay function
is.retain
do we retain this iteration?
circulant
circulant function
lgcpInits
lgcpInits function
serr
serr function
affine.fromSPDF
affine.fromSPDF function
print.dump2dir
print.dump2dir function
plot.stppp
plot.stppp function
lgcpvignette
lgcpvignette function
stapp.SpatialPolygonsDataFrame
stapp.SpatialPolygonsDataFrame function
is.pow2
is.pow2 function
GAfinalise.nullAverage
GAfinalise.nullAverage function
varfield.lgcpPredictINLA
varfield.lgcpPredictINLA function
CovFunction
CovFunction function
addTemporalCovariates
addTemporalCovariates function
xvals.lgcpPredict
xvals.lgcpPredict function
zvals
zvals function
computeGradtruncSpatial
computeGradtruncSpatial function
KinhomAverage
KinhomAverage function
showGrid.default
showGrid.default function
plotExceed.array
plotExceed.array function
my.KinhomAverage
my.KinhomAverage function
transblack
transblack function
rescale.mstppp
rescale.mstppp function
parautocorr
parautocorr function
GAreturnvalue
GAreturnvalue function
print.fromFunction
print.fromFunction function
xvals.SpatialGridDataFrame
xvals.SpatialGridDataFrame function
blockcircbaseFunction
blockcircbaseFunction function
discreteWindow.lgcpPredict
discreteWindow.lgcpPredict function
minimum.contrast.spatiotemporal
minimum.contrast.spatiotemporal function
intens
intens function
nextStep
next step of an MCMC chain
gu
gu function
gridfun
gridfun function
loc2poly
loc2poly function
as.SpatialGridDataFrame.fromXYZ
as.SpatialGridDataFrame.fromXYZ function
extendspatialAtRisk
extendspatialAtRisk function
mcmctrace
mcmctrace function
neigh2D
neigh2D function
roteffgain
roteffgain function
rgauss
rgauss function
loop.mcmc
loop over an iterator
as.owin.stapp
as.owin.stapp function
temporalAtRisk
temporalAtRisk function
raster.lgcpgrid
raster.lgcpgrid function
fftinterpolate
fftinterpolate function
wpopdata
Population of Welsh counties
multiply.list
multiply.list function
zvals.default
zvals.default function
print.mcmc
print.mcmc function
thetaEst
thetaEst function
traceplots
traceplots function
resetLoop
reset iterator
mcmcProgressTk
graphical progress monitor
temporalAtRisk.function
temporalAtRisk.function function