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lgcp
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Install
install.packages('lgcp')
Monthly Downloads
1,097
Version
1.3-14
License
GPL-2 | GPL-3
Maintainer
Benjamin Taylor
Last Published
January 11th, 2016
Functions in lgcp (1.3-14)
Search functions
GAupdate
GAupdate function
GAreturnvalue
GAreturnvalue function
GFinitialise.nullFunction
GFinitialise.nullFunction function
K.u
K.u function
MALAlgcpSpatial
MALAlgcpSpatial function
Extract.mstppp
Extract.mstppp function
EvaluatePrior
EvaluatePrior function
GAfinalise
GAfinalise function
CovFunction.function
CovFunction.function function
GFinitialise
GFinitialise function
SpikedExponentialCovFct
SpikedExponentialCovFct function
lambdaEst
lambdaEst function
GFreturnvalue.nullFunction
GFreturnvalue.nullFunction function
KinhomAverage
KinhomAverage function
affine.fromXYZ
affine.fromXYZ function
as.im.fromXYZ
as.im.fromXYZ function
lgcppars
lgcppars function
GAfinalise.nullAverage
GAfinalise.nullAverage function
GPlist2array
GPlist2array function
GaussianPrior
GaussianPrior function
SpatialPolygonsDataFrame.stapp
SpatialPolygonsDataFrame.stapp function
mstppp
mstppp function
etavals
etavals function
GPrealisation
GPrealisation function
Cvb
Cvb function
MALAlgcpMultitypeSpatial.PlusPars
MALAlgcpMultitypeSpatial.PlusPars function
quantile.lgcpgrid
quantile.lgcpgrid function
constantInTime.stppp
constantInTime.stppp function
getlgcpPredictSpatialINLA
getlgcpPredictSpatialINLA function
discreteWindow
discreteWindow function
GAinitialise
GAinitialise function
gridInWindow
gridInWindow function
C.diff.single.im
C.diff.single.im function
GFfinalise.nullFunction
GFfinalise.nullFunction function
MonteCarloAverage
MonteCarloAverage function
GAreturnvalue.MonteCarloAverage
GAreturnvalue.MonteCarloAverage function
nullAverage
nullAverage function
BetaParameters
BetaParameters function
image.lgcpgrid
image.lgcpgrid function
paramprec
paramprec function
GammafromY
GammafromY function
extract
extract function
fftinterpolate.fromSPDF
fftinterpolate.fromSPDF function
as.owinlist.SpatialPolygonsDataFrame
as.owinlist.SpatialPolygonsDataFrame function
GAfinalise.MonteCarloAverage
GAfinalise.MonteCarloAverage function
raster.lgcpgrid
raster.lgcpgrid function
clearinterp
clearinterp function
getLHSformulaList
getLHSformulaList function
affine.fromSPDF
affine.fromSPDF function
lgcpSim
lgcpSim function
GAupdate.MonteCarloAverage
GAupdate.MonteCarloAverage function
gridfun.lgcpPredict
gridfun.lgcpPredict function
rr.lgcpPredict
rr.lgcpPredict function
ginhomAverage
ginhomAverage function
GFfinalise
GFfinalise function
expectation.lgcpPredictSpatialOnlyPlusParameters
expectation.lgcpPredictSpatialOnlyPlusParameters function
as.owinlist.stapp
as.owinlist.stapp function
fftmultiply
fftmultiply function
spatialAtRisk.SpatialPolygonsDataFrame
spatialAtRisk.SpatialPolygonsDataFrame function
lgcp-package
lgcp
interptypes
interptypes function
serr
serr function
autocorr
autocorr function
samplePosterior
samplePosterior function
GFupdate
GFupdate function
betavals
betavals function
aggCovInfo
aggCovInfo function
PriorSpec.list
PriorSpec.list function
GAinitialise.nullAverage
GAinitialise.nullAverage function
getZmats
getZmats function
spatialAtRisk.function
spatialAtRisk.function function
mcmcProgressNone
null progress monitor
intens.lgcpPredict
intens.lgcpPredict function
affine.fromFunction
affine.fromFunction function
getup
getup function
GAupdate.nullAverage
GAupdate.nullAverage function
add.list
add.list function
circulant.numeric
circulant.numeric function
bt.scalar
bt.scalar function
expectation
expectation function
circulant
circulant function
GFinitialise.dump2dir
GFinitialise.dump2dir function
Extract.stppp
Extract.stppp function
guessinterp
guessinterp function
LogGaussianPrior
LogGaussianPrior function
aggregateformulaList
aggregateformulaList function
exceedProbs
exceedProbs function
print.stppp
print.stppp function
transgreen
transgreen function
seintens.lgcpPredict
seintens.lgcpPredict function
spatialIntensities.fromSPDF
spatialIntensities.fromSPDF function
K.val
K.val function
GFreturnvalue.dump2dir
GFreturnvalue.dump2dir function
lgcpgrid.matrix
lgcpgrid.matrix function
lgcpForecast
lgcpForecast function
computeGradtruncSpatioTemporal
computeGradtruncSpatioTemporal function
as.im.fromFunction
as.im.fromFunction function
lgcpSimMultitypeSpatialCovariates
lgcpSimMultitypeSpatialCovariates function
affine.stppp
affine.stppp function
hvals
hvals function
integerise.mstppp
integerise.mstppp function
integerise
integerise function
gOverlay
gOverlay function
gridav.lgcpPredict
gridav.lgcpPredict function
checkObsWin
checkObsWin function
as.SpatialPixelsDataFrame
as.SpatialPixelsDataFrame function
discreteWindow.lgcpPredict
discreteWindow.lgcpPredict function
mcmcLoop
iterator for MCMC loops
varfield.lgcpPredictINLA
varfield.lgcpPredictINLA function
GFreturnvalue
GFreturnvalue function
postcov.lgcpPredictSpatialOnlyPlusParameters
postcov.lgcpPredictSpatialOnlyPlusParameters function
identify.lgcpPredict
identify.lgcpPredict function
selectObsWindow
selectObsWindow function
lgcpPrior
lgcpPrior function
lgcpSimSpatial
lgcpSimSpatial function
as.fromXYZ
as.fromXYZ function
constantInTime.numeric
constantInTime.numeric function
initialiseAMCMC.andrieuthomsh
initaliseAMCMC.andrieuthomsh function
inversebase
inversebase function
meanfield.lgcpPredict
meanfield.lgcpPredict function
as.owin.stapp
as.owin.stapp function
as.SpatialGridDataFrame.fromXYZ
as.SpatialGridDataFrame.fromXYZ function
eigenfrombase
eigenfrombase function
is.retain
do we retain this iteration?
spatialAtRisk.bivden
spatialAtRisk.bivden function
spatialAtRisk.SpatialGridDataFrame
spatialAtRisk.SpatialGridDataFrame function
updateAMCMC
updateAMCMC function
assigninterp
assigninterp function
my.ginhomAverage
my.ginhomAverage function
getCovParameters.list
getCovParameters.list function
ltar
ltar function
grid2spts
grid2spts function
is.burnin
is this a burn-in iteration?
fftinterpolate.fromFunction
fftinterpolate.fromFunction function
spatialIntensities.fromXYZ
spatialIntensities.fromXYZ function
plotExceed.lgcpPredict
plotExceed.lgcpPredict function
mcmcProgressTextBar
text bar progress monitor
getCovParameters
getCovParameters function
constanth
constanth function
exceedProbsAggregated
exceedProbsAggregated function
print.fromFunction
print.fromFunction function
computeGradtruncSpatial
computeGradtruncSpatial function
is.SPD
is.SPD function
yvals.default
yvals.default function
plotit
plotit function
meanfield
meanfield function
lgcpPredictAggregateSpatialPlusPars
lgcpPredictAggregateSpatialPlusPars function
print.stapp
print.stapp function
thetaEst
thetaEst function
updateAMCMC.andrieuthomsh
updateAMCMC.andrieuthomsh function
condProbs
condProbs function
formulaList
formulaList function
varfield
varfield function
g.diff.single
g.diff.single function
density.stppp
density.stppp function
dump2dir
dump2dir function
parsummary
parsummary function
fftinterpolate.fromXYZ
interpolate.fromXYZ function
paramprecbase
paramprecbase function
stGPrealisation
stGPrealisation function
lgcpSimSpatialCovariates
lgcpSimSpatialCovariates function
PriorSpec
PriorSpec function
selectObsWindow.default
selectObsWindow.default function
nextStep
next step of an MCMC chain
wpopdata
Population of Welsh counties
loop.mcmc
loop over an iterator
getZmat
getZmat function
plotExceed.array
plotExceed.array function
print.mstppp
print.mstppp function
plot.mcmcdiag
plot.mcmcdiag function
getRotation
getRotation function
iteration
iteration number
getpolyol
getpolyol function
spatialAtRisk
spatialAtRisk function
sparsebase
sparsebase function
xvals.SpatialGridDataFrame
xvals.SpatialGridDataFrame function
muEst
muEst function
showGrid
showGrid function
intens
intens function
plot.lgcpPredict
plot.lgcpPredict function
hasNext
generic hasNext method
plot.lgcpQuantiles
plot.lgcpQuantiles function
parautocorr
parautocorr function
wtowns
Welsh town details: population
toral.cov.mat
toral.cov.mat function
RandomFieldsCovFct
RandomFieldsCovFct function
lgcpPredictSpatial
lgcpPredictSpatial function
segProbs
segProbs function
showGrid.lgcpPredict
showGrid.lgcpPredict function
rescale.stppp
rescale.stppp function
updateAMCMC.constanth
updateAMCMC.constanth function
as.SpatialPixelsDataFrame.lgcpgrid
as.SpatialPixelsDataFrame.lgcpgrid function
mcmcProgressTk
graphical progress monitor
txtProgressBar2
A text progress bar with label
xvals.lgcpPredict
xvals.lgcpPredict function
transblack
transblack function
GFfinalise.dump2dir
GFfinalise.dump2dir function
GAinitialise.MonteCarloAverage
GAinitialise.MonteCarloAverage function
window.lgcpPredict
window.lgcpPredict function
my.KinhomAverage
my.KinhomAverage function
print.fromXYZ
print.fromXYZ function
transblue
transblue function
priorpost
priorpost function
lgcpPredictSpatioTemporalPlusPars
lgcpPredictSpatioTemporalPlusPars function
intens.lgcpSimSpatialPlusParameters
intens.lgcpSimSpatialPlusParameters function
spatialparsEst
spatialparsEst function
integerise.stppp
integerise.stppp function
plot.fromXYZ
plot.fromXYZ function
lgcpInits
lgcpInits function
yvals
yvals function
as.array.lgcpgrid
as.array.lgcpgrid function
rotmat
rotmat function
loc2poly
loc2poly function
circulant.matrix
circulant.matrix function
temporalAtRisk.function
temporalAtRisk.function function
expectation.lgcpPredict
expectation.lgcpPredict function
selectObsWindow.stppp
selectObsWindow.stppp function
plot.lgcpgrid
plot.lgcpgrid function
lgcpbayes
lgcpbayes function
print.lgcpgrid
print.lgcpgrid function
resetLoop
reset iterator
stppp.ppp
stppp.ppp function
showGrid.default
showGrid.default function
print.lgcpPredict
print.lgcpPredict function
fftinterpolate
fftinterpolate function
zvals.SpatialGridDataFrame
zvals.SpatialGridDataFrame function
getRotation.default
getRotation.default function
print.temporalAtRisk
print.temporalAtRisk function
print.mcmc
print.mcmc function
rr
rr function
GPdrv2_Multitype
GPdrv2_Multitype function
postcov.lgcpPredictMultitypeSpatialPlusParameters
postcov.lgcpPredictMultitypeSpatialPlusParameters function
quantile.lgcpPredict
quantile.lgcpPredict function
intens.lgcpSimMultitypeSpatialPlusParameters
intens.lgcpSimMultitypeSpatialPlusParameters function
mstppp.stppp
mstppp.stppp function
aggCovInfo.ArealWeightedSum
aggCovInfo.ArealWeightedSum function
setTxtProgressBar2
set the progress bar
zvals
zvals function
target.and.grad.SpatioTemporalPlusPars
target.and.grad.SpatioTemporalPlusPars function
as.ppp.mstppp
as.ppp.mstppp function
lgcpgrid
lgcpgrid function
minimum.contrast.spatiotemporal
minimum.contrast.spatiotemporal function
spatialAtRisk.lgcpgrid
spatialAtRisk.lgcpgrid function
blockcircbase
blockcircbase function
xvals.default
xvals.default function
target.and.grad.spatial
target.and.grad.spatial function
MALAlgcpSpatioTemporal.PlusPars
MALAlgcpSpatioTemporal.PlusPars function
meanfield.lgcpPredictINLA
meanfield.lgcpPredictINLA function
at
at function
covEffects
covEffects function
CovParameters
CovParameters function
plot.temporalAtRisk
plot.temporalAtRisk function
target.and.grad.spatialPlusPars
target.and.grad.spatialPlusPars function
spatialAtRisk.fromXYZ
spatialAtRisk.fromXYZ function
setoutput
setoutput function
rgauss
rgauss function
getCovParameters.GPrealisation
getCovParameters.GPrealisation function
MALAlgcpSpatial.PlusPars
MALAlgcpSpatial.PlusPars function
lgcpvignette
lgcpvignette function
osppp2merc
osppp2merc function
YfromGamma
YfromGamma function
stapp.SpatialPolygonsDataFrame
stapp.SpatialPolygonsDataFrame function
autocorrMultitype
autocorrMultitype function
cov.interp.fft
cov.interp.fft function
andrieuthomsh
andrieuthomsh function
minimum.contrast
minimum.contrast function
target.and.grad.AggregateSpatialPlusPars
target.and.grad.AggregateSpatialPlusPars function
neigh2D
neigh2D function
zvals.default
zvals.default function
d.func
d.func function
plotExceed
plotExceed function
as.fromXYZ.fromFunction
as.fromXYZ.fromFunction function
spatialAtRisk.default
spatialAtRisk.default function
textsummary
textsummary function
as.ppp.stppp
as.ppp.stppp function
summary.mcmc
summary.mcmc function
exponentialCovFct
exponentialCovFct function
grid2spix
grid2spix function
gu
gu function
genFFTgrid
genFFTgrid function
initialiseAMCMC.constanth
initaliseAMCMC.constanth function
getinterp
getinterp function
lgcpPredict
lgcpPredict function
lambdaEst.ppp
lambdaEst.ppp function
affine.SpatialPolygonsDataFrame
affine.SpatialPolygonsDataFrame function
seintens
seintens function
mcmcpars
mcmcpars function
plot.fromSPDF
plot.fromSPDF function
target.and.grad.spatiotemporal
target.and.grad.spatiotemporal function
print.gridaverage
print.gridaverage function
aggCovInfo.ArealWeightedMean
aggCovInfo.ArealWeightedMean function
addTemporalCovariates
addTemporalCovariates function
showGrid.stppp
showGrid.stppp function
summary.lgcpgrid
summary.lgcpgrid function
zvals.fromXYZ
zvals.fromXYZ function
target.and.grad.MultitypespatialPlusPars
target.and.grad.MultitypespatialPlusPars function
MALAlgcpAggregateSpatial.PlusPars
MALAlgcpAggregateSpatial.PlusPars function
transred
transred function
temporalAtRisk
temporalAtRisk function
as.owinlist
as.owinlist function
yvals.lgcpPredict
yvals.lgcpPredict function
as.im.fromSPDF
as.im.fromSPDF function
initialiseAMCMC
initialiseAMCMC function
gridav
gridav function
lambdaEst.stppp
lambdaEst.stppp function
matchcovariance
matchcovariance function
GFupdate.dump2dir
GFupdate.dump2dir function
mcmcProgressPrint
printing progress monitor
aggCovInfo.Majority
aggCovInfo.Majority function
blockcircbaseFunction
blockcircbaseFunction function
extract.lgcpPredict
extract.lgcpPredict function
GAreturnvalue.nullAverage
GAreturnvalue.nullAverage function##'
GFupdate.nullFunction
GFupdate.nullFunction function
nullFunction
nullFunction function
plot.lgcpZmat
plot.lgcpZmat function
getCellCounts
getCellCounts function
roteffgain
roteffgain function
extendspatialAtRisk
extendspatialAtRisk function
serr.lgcpPredict
serr.lgcpPredict function
K.diff.single
K.diff.single function
tempRaster
tempRaster function
MALAlgcp
MALAlgcp function
hasNext.iter
hasNext.iter function
identifygrid
identifygrid function
aggregateCovariateInfo
aggregateCovariateInfo function
as.list.lgcpgrid
as.list.lgcpgrid function
plot.lgcpAutocorr
plot.lgcpAutocorr function
grid2spoly
grid2spoly function
fftgrid
fftgrid function
varfield.lgcpPredict
varfield.lgcpPredict function
plot.stppp
plot.stppp function
postcov.lgcpPredictAggregateSpatialPlusParameters
postcov.lgcpPredictAggregateSpatialPlusParameters function
hvals.lgcpPredict
hvals.lgcpPredict function
rescale.mstppp
rescale.mstppp function
smultiply.list
smultiply.list function
print.dump2dir
print.dump2dir function
spatialIntensities
spatialIntensities function
temporalAtRisk.numeric
temporalAtRisk.numeric function
stppp.list
stppp.list function
stppp
stppp function
yvals.fromXYZ
yvals.fromXYZ function
GPdrv2
GPdrv2 function
traceplots
traceplots function
yvals.SpatialGridDataFrame
yvals.SpatialGridDataFrame function
GPdrv
GPdrv function
xvals.fromXYZ
xvals.fromXYZ function
as.stppp
as.stppp function
chooseCellwidth
chooseCellwidth function
constantInTime
constantInTime function
getCounts
getCounts function
getRotation.stppp
getRotation.stppp function
mcmctrace.lgcpPredict
mcmctrace.lgcpPredict function
grid2spdf
grid2spdf function
multiply.list
multiply.list function
neattable
neattable function
osppp2latlon
osppp2latlon function
postcov.lgcpPredictSpatioTemporalPlusParameters
postcov.lgcpPredictSpatioTemporalPlusParameters function
plot.mstppp
plot.mstppp function
numCases
numCases function
mstppp.ppp
mstppp.ppp function
xvals
xvals function
touchingowin
touchingowin function
CovFunction
CovFunction function
as.SpatialGridDataFrame
as.SpatialGridDataFrame function
as.stppp.stapp
as.stppp.stapp function
gridfun
gridfun function
is.pow2
is.pow2 function
lgcpPredictAggregated
lgcpPredictAggregated function
lgcpPredictMultitypeSpatialPlusPars
lgcpPredictMultitypeSpatialPlusPars function
lgcpPredictSpatialINLA
lgcpPredictSpatialINLA function
lgcpPredictSpatialPlusPars
lgcpPredictSpatialPlusPars function
lgcpgrid.list
lgcpgrid.list function
lgcpgrid.array
lgcpgrid.array function
mcmctrace
mcmctrace function
postcov
postcov function
mstppp.list
mstppp.list function
print.fromSPDF
print.fromSPDF function
spatialAtRisk.im
spatialAtRisk.im function
stapp
stapp function
stapp.list
stapp.list function
wtowncoords
Welsh town details: location