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lgcp (version 1.3-2)
Log-Gaussian Cox Process
Description
Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process
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Install
install.packages('lgcp')
Monthly Downloads
822
Version
1.3-2
License
GPL-3
Maintainer
Benjamin Taylor
Last Published
June 14th, 2013
Functions in lgcp (1.3-2)
Search all functions
CovParameters
CovParameters function
GFfinalise.dump2dir
GFfinalise.dump2dir function
Extract.mstppp
Extract.mstppp function
andrieuthomsh
andrieuthomsh function
as.fromXYZ
as.fromXYZ function
KinhomAverage
KinhomAverage function
expectation.lgcpPredictSpatialOnlyPlusParameters
expectation.lgcpPredictSpatialOnlyPlusParameters function
GaussianPrior
GaussianPrior function
aggregateformulaList
aggregateformulaList function
as.ppp.mstppp
as.ppp.mstppp function
GAupdate
GAupdate function
GAfinalise.nullAverage
GAfinalise.nullAverage function
constantInTime.stppp
constantInTime.stppp function
GPdrv
GPdrv function
aggCovInfo.ArealWeightedMean
aggCovInfo.ArealWeightedMean function
discreteWindow.lgcpPredict
discreteWindow.lgcpPredict function
K.diff.single
K.diff.single function
aggCovInfo
aggCovInfo function
MALAlgcpSpatial
MALAlgcpSpatial function
aggCovInfo.ArealWeightedSum
aggCovInfo.ArealWeightedSum function
circulant.matrix
circulant.matrix function
GFfinalise.nullFunction
GFfinalise.nullFunction function
g.diff.single
g.diff.single function
getRotation.stppp
getRotation.stppp function
GFupdate.dump2dir
GFupdate.dump2dir function
GAreturnvalue.nullAverage
GAreturnvalue.nullAverage function##'
gridfun
gridfun function
affine.fromXYZ
affine.fromXYZ function
as.owinlist
as.owinlist function
computeGradtruncSpatial
computeGradtruncSpatial function
GAreturnvalue.MonteCarloAverage
GAreturnvalue.MonteCarloAverage function
MALAlgcpSpatioTemporal.PlusPars
MALAlgcpSpatioTemporal.PlusPars function
GPlist2array
GPlist2array function
MALAlgcp
MALAlgcp function
GAinitialise
GAinitialise function
BetaParameters
BetaParameters function
as.SpatialGridDataFrame
as.SpatialGridDataFrame function
SpatialPolygonsDataFrame.stapp
SpatialPolygonsDataFrame.stapp function
bt.scalar
bt.scalar function
GFupdate
GFupdate function
grid2spix
grid2spix function
constanth
constanth function
GPdrv2_Multitype
GPdrv2_Multitype function
getup
getup function
intens
intens function
getpolyol
getpolyol function
as.stppp.stapp
as.stppp.stapp function
CovFunction
CovFunction function
as.SpatialGridDataFrame.fromXYZ
as.SpatialGridDataFrame.fromXYZ function
lgcppars
lgcppars function
LogGaussianPrior
LogGaussianPrior function
fftinterpolate
fftinterpolate function
GAreturnvalue
GAreturnvalue function
is.burnin
is this a burn-in iteration?
gridInWindow
gridInWindow function
GammafromY
GammafromY function
blockcircbase
blockcircbase function
affine.fromSPDF
affine.fromSPDF function
meanfield.lgcpPredict
meanfield.lgcpPredict function
integerise.stppp
integerise.stppp function
intens.lgcpPredict
intens.lgcpPredict function
loc2poly
loc2poly function
mstppp
mstppp function
d.func
d.func function
initialiseAMCMC
initialiseAMCMC function
lgcpPredict
lgcpPredict function
EvaluatePrior
EvaluatePrior function
lgcpPredictMultitypeSpatialPlusPars
lgcpPredictMultitypeSpatialPlusPars function
minimum.contrast
minimum.contrast function
plot.lgcpgrid
plot.lgcpgrid function
lgcpInits
lgcpInits function
as.SpatialPixelsDataFrame
as.SpatialPixelsDataFrame function
Cvb
Cvb function
as.array.lgcpgrid
as.array.lgcpgrid function
lgcpSimMultitypeSpatialCovariates
lgcpSimMultitypeSpatialCovariates function
as.stppp
as.stppp function
GFinitialise.dump2dir
GFinitialise.dump2dir function
chooseCellwidth
chooseCellwidth function
GAupdate.nullAverage
GAupdate.nullAverage function
plot.lgcpZmat
plot.lgcpZmat function
constantInTime.numeric
constantInTime.numeric function
MALAlgcpSpatial.PlusPars
MALAlgcpSpatial.PlusPars function
image.lgcpgrid
image.lgcpgrid function
checkObsWin
checkObsWin function
affine.stppp
affine.stppp function
meanfield.lgcpPredictINLA
meanfield.lgcpPredictINLA function
assigninterp
assigninterp function
MonteCarloAverage
MonteCarloAverage function
lgcpPredictSpatial
lgcpPredictSpatial function
mcmctrace
mcmctrace function
etavals
etavals function
postcov
postcov function
lgcpPredictAggregated
lgcpPredictAggregated function
mcmcpars
mcmcpars function
extract.lgcpPredict
extract.lgcpPredict function
plot.fromXYZ
plot.fromXYZ function
extendspatialAtRisk
extendspatialAtRisk function
GAfinalise
GAfinalise function
density.stppp
density.stppp function
discreteWindow
discreteWindow function
GAinitialise.nullAverage
GAinitialise.nullAverage function
mcmcProgressTk
graphical progress monitor
fftinterpolate.fromSPDF
fftinterpolate.fromSPDF function
extract
extract function
fftgrid
fftgrid function
plot.lgcpQuantiles
plot.lgcpQuantiles function
lgcpSimSpatialCovariates
lgcpSimSpatialCovariates function
ginhomAverage
ginhomAverage function
lgcpSimSpatial
lgcpSimSpatial function
getCounts
getCounts function
hvals.lgcpPredict
hvals.lgcpPredict function
affine.SpatialPolygonsDataFrame
affine.SpatialPolygonsDataFrame function
print.fromFunction
print.fromFunction function
getRotation.default
getRotation.default function
exponentialCovFct
exponentialCovFct function
is.SPD
is.SPD function
gu
gu function
plot.mstppp
plot.mstppp function
print.temporalAtRisk
print.temporalAtRisk function
spatialAtRisk.SpatialGridDataFrame
spatialAtRisk.SpatialGridDataFrame function
lgcpForecast
lgcpForecast function
mcmcProgressPrint
printing progress monitor
print.mcmc
print.mcmc function
print.gridaverage
print.gridaverage function
seintens
seintens function
my.KinhomAverage
my.KinhomAverage function
eigenfrombase
eigenfrombase function
print.mstppp
print.mstppp function
is.retain
do we retain this iteration?
updateAMCMC.andrieuthomsh
updateAMCMC.andrieuthomsh function
spatialAtRisk.bivden
spatialAtRisk.bivden function
print.lgcpPredict
print.lgcpPredict function
samplePosterior
samplePosterior function
nextStep
next step of an MCMC chain
serr
serr function
rr
rr function
raster.lgcpgrid
raster.lgcpgrid function
showGrid.default
showGrid.default function
grid2spdf
grid2spdf function
GPrealisation
GPrealisation function
GAupdate.MonteCarloAverage
GAupdate.MonteCarloAverage function
resetLoop
reset iterator
stapp.list
stapp.list function
guessinterp
guessinterp function
parsummary
parsummary function
sparsebase
sparsebase function
getZmats
getZmats function
minimum.contrast.spatiotemporal
minimum.contrast.spatiotemporal function
summary.lgcpgrid
summary.lgcpgrid function
lgcpgrid
lgcpgrid function
postcov.lgcpPredictSpatioTemporalPlusParameters
postcov.lgcpPredictSpatioTemporalPlusParameters function
lgcp
lgcp
plot.fromSPDF
plot.fromSPDF function
quantile.lgcpgrid
quantile.lgcpgrid function
target.and.grad.spatial
target.and.grad.spatial function
target.and.grad.MultitypespatialPlusPars
target.and.grad.MultitypespatialPlusPars function
spatialAtRisk.default
spatialAtRisk.default function
as.im.fromSPDF
as.im.fromSPDF function
spatialIntensities
spatialIntensities function
autocorrMultitype
autocorrMultitype function
SpikedExponentialCovFct
SpikedExponentialCovFct function
thetaEst
thetaEst function
rr.lgcpPredict
rr.lgcpPredict function
at
at function
as.im.fromXYZ
as.im.fromXYZ function
lgcpPredictSpatioTemporalPlusPars
lgcpPredictSpatioTemporalPlusPars function
spatialIntensities.fromSPDF
spatialIntensities.fromSPDF function
iteration
iteration number
priorpost
priorpost function
PriorSpec
PriorSpec function
xvals
xvals function
transblue
transblue function
yvals.lgcpPredict
yvals.lgcpPredict function
lgcpgrid.list
lgcpgrid.list function
stapp.SpatialPolygonsDataFrame
stapp.SpatialPolygonsDataFrame function
dump2dir
dump2dir function
as.im.fromFunction
as.im.fromFunction function
target.and.grad.AggregateSpatialPlusPars
target.and.grad.AggregateSpatialPlusPars function
mstppp.list
mstppp.list function
yvals.SpatialGridDataFrame
yvals.SpatialGridDataFrame function
transred
transred function
zvals.fromXYZ
zvals.fromXYZ function
tempRaster
tempRaster function
GPdrv2
GPdrv2 function
rescale.stppp
rescale.stppp function
as.ppp.stppp
as.ppp.stppp function
exceedProbs
exceedProbs function
print.stppp
print.stppp function
varfield.lgcpPredict
varfield.lgcpPredict function
temporalAtRisk
temporalAtRisk function
betavals
betavals function
smultiply.list
smultiply.list function
blockcircbaseFunction
blockcircbaseFunction function
mstppp.stppp
mstppp.stppp function
genFFTgrid
genFFTgrid function
MALAlgcpMultitypeSpatial.PlusPars
MALAlgcpMultitypeSpatial.PlusPars function
rgauss
rgauss function
MALAlgcpAggregateSpatial.PlusPars
MALAlgcpAggregateSpatial.PlusPars function
getZmat
getZmat function
updateAMCMC.constanth
updateAMCMC.constanth function
spatialAtRisk.im
spatialAtRisk.im function
getinterp
getinterp function
mcmcProgressNone
null progress monitor
zvals.default
zvals.default function
plot.lgcpAutocorr
plot.lgcpAutocorr function
numCases
numCases function
temporalAtRisk.numeric
temporalAtRisk.numeric function
getCovParameters.GPrealisation
getCovParameters.GPrealisation function
hasNext.iter
hasNext.iter function
gridav
gridav function
condProbs
condProbs function
wtowns
Welsh town details: population
identifygrid
identifygrid function
varfield.lgcpPredictINLA
varfield.lgcpPredictINLA function
addTemporalCovariates
addTemporalCovariates function
target.and.grad.SpatioTemporalPlusPars
target.and.grad.SpatioTemporalPlusPars function
YfromGamma
YfromGamma function
interptypes
interptypes function
plot.temporalAtRisk
plot.temporalAtRisk function
neattable
neattable function
touchingowin
touchingowin function
autocorr
autocorr function
Extract.stppp
Extract.stppp function
GAinitialise.MonteCarloAverage
GAinitialise.MonteCarloAverage function
postcov.lgcpPredictSpatialOnlyPlusParameters
postcov.lgcpPredictSpatialOnlyPlusParameters function
fftinterpolate.fromFunction
fftinterpolate.fromFunction function
mcmctrace.lgcpPredict
mcmctrace.lgcpPredict function
fftmultiply
fftmultiply function
getLHSformulaList
getLHSformulaList function
stppp.list
stppp.list function
meanfield
meanfield function
GFreturnvalue.dump2dir
GFreturnvalue.dump2dir function
muEst
muEst function
postcov.lgcpPredictAggregateSpatialPlusParameters
postcov.lgcpPredictAggregateSpatialPlusParameters function
CovFunction.function
CovFunction.function function
constantInTime
constantInTime function
aggregateCovariateInfo
aggregateCovariateInfo function
getCovParameters
getCovParameters function
matchcovariance
matchcovariance function
circulant.numeric
circulant.numeric function
integerise.mstppp
integerise.mstppp function
paramprecbase
paramprecbase function
getlgcpPredictSpatialINLA
getlgcpPredictSpatialINLA function
xvals.lgcpPredict
xvals.lgcpPredict function
plotExceed
plotExceed function
gridfun.lgcpPredict
gridfun.lgcpPredict function
seintens.lgcpPredict
seintens.lgcpPredict function
identify.lgcpPredict
identify.lgcpPredict function
lgcpPredictSpatialINLA
lgcpPredictSpatialINLA function
xvals.fromXYZ
xvals.fromXYZ function
hvals
hvals function
affine.fromFunction
affine.fromFunction function
ltar
ltar function
plotExceed.array
plotExceed.array function
intens.lgcpSimSpatialPlusParameters
intens.lgcpSimSpatialPlusParameters function
spatialAtRisk
spatialAtRisk function
computeGradtruncSpatioTemporal
computeGradtruncSpatioTemporal function
mstppp.ppp
mstppp.ppp function
clearinterp
clearinterp function
gOverlay
gOverlay function
multiply.list
multiply.list function
mcmcLoop
iterator for MCMC loops
plot.mcmcdiag
plot.mcmcdiag function
formulaList
formulaList function
plotExceed.lgcpPredict
plotExceed.lgcpPredict function
lgcpSim
lgcpSim function
print.stapp
print.stapp function
stppp
stppp function
showGrid.lgcpPredict
showGrid.lgcpPredict function
plot.stppp
plot.stppp function
roteffgain
roteffgain function
loop.mcmc
loop over an iterator
spatialAtRisk.fromXYZ
spatialAtRisk.fromXYZ function
lgcpgrid.array
lgcpgrid.array function
hasNext
generic hasNext method
yvals.default
yvals.default function
spatialIntensities.fromXYZ
spatialIntensities.fromXYZ function
my.ginhomAverage
my.ginhomAverage function
target.and.grad.spatiotemporal
target.and.grad.spatiotemporal function
nullFunction
nullFunction function
temporalAtRisk.function
temporalAtRisk.function function
initialiseAMCMC.constanth
initaliseAMCMC.constanth function
traceplots
traceplots function
rotmat
rotmat function
setoutput
setoutput function
GFinitialise
GFinitialise function
GFreturnvalue
GFreturnvalue function
GFinitialise.nullFunction
GFinitialise.nullFunction function
spatialparsEst
spatialparsEst function
toral.cov.mat
toral.cov.mat function
C.diff.single.im
C.diff.single.im function
GFupdate.nullFunction
GFupdate.nullFunction function
add.list
add.list function
xvals.SpatialGridDataFrame
xvals.SpatialGridDataFrame function
xvals.default
xvals.default function
window.lgcpPredict
window.lgcpPredict function
zvals
zvals function
GFreturnvalue.nullFunction
GFreturnvalue.nullFunction function
K.val
K.val function
as.SpatialPixelsDataFrame.lgcpgrid
as.SpatialPixelsDataFrame.lgcpgrid function
as.owinlist.stapp
as.owinlist.stapp function
as.owin.stapp
as.owin.stapp function
exceedProbsAggregated
exceedProbsAggregated function
K.u
K.u function
grid2spts
grid2spts function
intens.lgcpSimMultitypeSpatialPlusParameters
intens.lgcpSimMultitypeSpatialPlusParameters function
cov.interp.fft
cov.interp.fft function
lgcpPredictAggregateSpatialPlusPars
lgcpPredictAggregateSpatialPlusPars function
expectation
expectation function
GFfinalise
GFfinalise function
fftinterpolate.fromXYZ
interpolate.fromXYZ function
getRotation
getRotation function
as.owinlist.SpatialPolygonsDataFrame
as.owinlist.SpatialPolygonsDataFrame function
getCovParameters.list
getCovParameters.list function
as.fromXYZ.fromFunction
as.fromXYZ.fromFunction function
lgcpPrior
lgcpPrior function
circulant
circulant function
parautocorr
parautocorr function
quantile.lgcpPredict
quantile.lgcpPredict function
getCellCounts
getCellCounts function
lambdaEst.ppp
lambdaEst.ppp function
gridav.lgcpPredict
gridav.lgcpPredict function
is.pow2
is.pow2 function
rescale.mstppp
rescale.mstppp function
serr.lgcpPredict
serr.lgcpPredict function
initialiseAMCMC.andrieuthomsh
initaliseAMCMC.andrieuthomsh function
integerise
integerise function
lgcpgrid.matrix
lgcpgrid.matrix function
stppp.ppp
stppp.ppp function
print.fromXYZ
print.fromXYZ function
showGrid.stppp
showGrid.stppp function
lambdaEst
lambdaEst function
transblack
transblack function
transgreen
transgreen function
neigh2D
neigh2D function
print.fromSPDF
print.fromSPDF function
osppp2latlon
osppp2latlon function
stGPrealisation
stGPrealisation function
print.lgcpgrid
print.lgcpgrid function
varfield
varfield function
zvals.SpatialGridDataFrame
zvals.SpatialGridDataFrame function
selectObsWindow.default
selectObsWindow.default function
selectObsWindow.stppp
selectObsWindow.stppp function
spatialAtRisk.function
spatialAtRisk.function function
textsummary
textsummary function
target.and.grad.spatialPlusPars
target.and.grad.spatialPlusPars function
spatialAtRisk.lgcpgrid
spatialAtRisk.lgcpgrid function
wpopdata
Population of Welsh counties
wtowncoords
Welsh town details: location
paramprec
paramprec function
osppp2merc
osppp2merc function
plotit
plotit function
segProbs
segProbs function
selectObsWindow
selectObsWindow function
spatialAtRisk.SpatialPolygonsDataFrame
spatialAtRisk.SpatialPolygonsDataFrame function
showGrid
showGrid function
summary.mcmc
summary.mcmc function
txtProgressBar2
A text progress bar with label
updateAMCMC
updateAMCMC function
yvals
yvals function
stapp
stapp function
GAfinalise.MonteCarloAverage
GAfinalise.MonteCarloAverage function
RandomFieldsCovFct
RandomFieldsCovFct function
aggCovInfo.Majority
aggCovInfo.Majority function
PriorSpec.list
PriorSpec.list function
as.list.lgcpgrid
as.list.lgcpgrid function
covEffects
covEffects function
expectation.lgcpPredict
expectation.lgcpPredict function
grid2spoly
grid2spoly function
inversebase
inversebase function
lambdaEst.stppp
lambdaEst.stppp function
lgcpPredictSpatialPlusPars
lgcpPredictSpatialPlusPars function
plot.lgcpPredict
plot.lgcpPredict function
mcmcProgressTextBar
text bar progress monitor
nullAverage
nullAverage function
print.dump2dir
print.dump2dir function
postcov.lgcpPredictMultitypeSpatialPlusParameters
postcov.lgcpPredictMultitypeSpatialPlusParameters function
setTxtProgressBar2
set the progress bar
yvals.fromXYZ
yvals.fromXYZ function