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lgcp (version 1.3-4)

Log-Gaussian Cox Process

Description

Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process

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Version

Install

install.packages('lgcp')

Monthly Downloads

829

Version

1.3-4

License

GPL-2 | GPL-3

Maintainer

Benjamin Taylor

Last Published

March 3rd, 2014

Functions in lgcp (1.3-4)

GFreturnvalue.nullFunction

GFreturnvalue.nullFunction function
as.ppp.mstppp

as.ppp.mstppp function
autocorr

autocorr function
MALAlgcpAggregateSpatial.PlusPars

MALAlgcpAggregateSpatial.PlusPars function
KinhomAverage

KinhomAverage function
etavals

etavals function
getpolyol

getpolyol function
MALAlgcp

MALAlgcp function
is.burnin

is this a burn-in iteration?
Extract.mstppp

Extract.mstppp function
integerise.mstppp

integerise.mstppp function
GAfinalise.nullAverage

GAfinalise.nullAverage function
GAinitialise.nullAverage

GAinitialise.nullAverage function
GFfinalise.dump2dir

GFfinalise.dump2dir function
affine.fromSPDF

affine.fromSPDF function
GFfinalise.nullFunction

GFfinalise.nullFunction function
K.val

K.val function
GAinitialise

GAinitialise function
GAupdate.nullAverage

GAupdate.nullAverage function
hasNext

generic hasNext method
GAupdate

GAupdate function
lgcpPredictSpatialINLA

lgcpPredictSpatialINLA function
GAreturnvalue.MonteCarloAverage

GAreturnvalue.MonteCarloAverage function
inversebase

inversebase function
GFupdate.nullFunction

GFupdate.nullFunction function
as.SpatialPixelsDataFrame

as.SpatialPixelsDataFrame function
GFfinalise

GFfinalise function
lgcppars

lgcppars function
MALAlgcpSpatioTemporal.PlusPars

MALAlgcpSpatioTemporal.PlusPars function
osppp2merc

osppp2merc function
spatialAtRisk.bivden

spatialAtRisk.bivden function
tempRaster

tempRaster function
blockcircbaseFunction

blockcircbaseFunction function
exponentialCovFct

exponentialCovFct function
aggCovInfo.ArealWeightedMean

aggCovInfo.ArealWeightedMean function
meanfield

meanfield function
showGrid

showGrid function
GAupdate.MonteCarloAverage

GAupdate.MonteCarloAverage function
GFupdate

GFupdate function
parsummary

parsummary function
SpikedExponentialCovFct

SpikedExponentialCovFct function
affine.fromXYZ

affine.fromXYZ function
constantInTime.stppp

constantInTime.stppp function
GammafromY

GammafromY function
dump2dir

dump2dir function
GFinitialise.nullFunction

GFinitialise.nullFunction function
computeGradtruncSpatial

computeGradtruncSpatial function
GFinitialise

GFinitialise function
as.stppp.stapp

as.stppp.stapp function
constantInTime

constantInTime function
GPdrv2_Multitype

GPdrv2_Multitype function
constantInTime.numeric

constantInTime.numeric function
assigninterp

assigninterp function
exceedProbs

exceedProbs function
GAreturnvalue

GAreturnvalue function
SpatialPolygonsDataFrame.stapp

SpatialPolygonsDataFrame.stapp function
fftmultiply

fftmultiply function
rescale.stppp

rescale.stppp function
as.ppp.stppp

as.ppp.stppp function
add.list

add.list function
GPdrv2

GPdrv2 function
expectation.lgcpPredictSpatialOnlyPlusParameters

expectation.lgcpPredictSpatialOnlyPlusParameters function
MonteCarloAverage

MonteCarloAverage function
segProbs

segProbs function
constanth

constanth function
affine.fromFunction

affine.fromFunction function
getlgcpPredictSpatialINLA

getlgcpPredictSpatialINLA function
expectation

expectation function
hasNext.iter

hasNext.iter function
lgcpgrid

lgcpgrid function
GPdrv

GPdrv function
as.fromXYZ.fromFunction

as.fromXYZ.fromFunction function
Cvb

Cvb function
GFinitialise.dump2dir

GFinitialise.dump2dir function
as.SpatialGridDataFrame

as.SpatialGridDataFrame function
spatialAtRisk.SpatialPolygonsDataFrame

spatialAtRisk.SpatialPolygonsDataFrame function
C.diff.single.im

C.diff.single.im function
GFreturnvalue

GFreturnvalue function
GFupdate.dump2dir

GFupdate.dump2dir function
d.func

d.func function
gu

gu function
mcmcProgressNone

null progress monitor
print.fromXYZ

print.fromXYZ function
GPlist2array

GPlist2array function
as.list.lgcpgrid

as.list.lgcpgrid function
is.SPD

is.SPD function
transblue

transblue function
RandomFieldsCovFct

RandomFieldsCovFct function
getCounts

getCounts function
xvals.fromXYZ

xvals.fromXYZ function
getCellCounts

getCellCounts function
getCovParameters.GPrealisation

getCovParameters.GPrealisation function
getinterp

getinterp function
GAfinalise.MonteCarloAverage

GAfinalise.MonteCarloAverage function
GPrealisation

GPrealisation function
rr.lgcpPredict

rr.lgcpPredict function
lgcp-package

lgcp
K.diff.single

K.diff.single function
intens

intens function
xvals.lgcpPredict

xvals.lgcpPredict function
lambdaEst.stppp

lambdaEst.stppp function
lgcpSimSpatialCovariates

lgcpSimSpatialCovariates function
getZmat

getZmat function
hvals

hvals function
formulaList

formulaList function
andrieuthomsh

andrieuthomsh function
YfromGamma

YfromGamma function
as.fromXYZ

as.fromXYZ function
affine.stppp

affine.stppp function
initialiseAMCMC.andrieuthomsh

initaliseAMCMC.andrieuthomsh function
ltar

ltar function
gridfun

gridfun function
lgcpPredictSpatial

lgcpPredictSpatial function
as.SpatialGridDataFrame.fromXYZ

as.SpatialGridDataFrame.fromXYZ function
plot.lgcpZmat

plot.lgcpZmat function
getLHSformulaList

getLHSformulaList function
minimum.contrast.spatiotemporal

minimum.contrast.spatiotemporal function
initialiseAMCMC.constanth

initaliseAMCMC.constanth function
parautocorr

parautocorr function
aggregateformulaList

aggregateformulaList function
as.owinlist.SpatialPolygonsDataFrame

as.owinlist.SpatialPolygonsDataFrame function
aggCovInfo.ArealWeightedSum

aggCovInfo.ArealWeightedSum function
gridInWindow

gridInWindow function
lgcpPredictSpatioTemporalPlusPars

lgcpPredictSpatioTemporalPlusPars function
as.owinlist.stapp

as.owinlist.stapp function
mstppp.ppp

mstppp.ppp function
lgcpSimSpatial

lgcpSimSpatial function
lgcpSim

lgcpSim function
priorpost

priorpost function
bt.scalar

bt.scalar function
rescale.mstppp

rescale.mstppp function
affine.SpatialPolygonsDataFrame

affine.SpatialPolygonsDataFrame function
fftgrid

fftgrid function
print.temporalAtRisk

print.temporalAtRisk function
as.SpatialPixelsDataFrame.lgcpgrid

as.SpatialPixelsDataFrame.lgcpgrid function
print.mcmc

print.mcmc function
CovFunction.function

CovFunction.function function
condProbs

condProbs function
matchcovariance

matchcovariance function
getRotation.stppp

getRotation.stppp function
fftinterpolate.fromFunction

fftinterpolate.fromFunction function
integerise.stppp

integerise.stppp function
ginhomAverage

ginhomAverage function
eigenfrombase

eigenfrombase function
mcmcpars

mcmcpars function
print.stppp

print.stppp function
grid2spix

grid2spix function
CovFunction

CovFunction function
lambdaEst

lambdaEst function
integerise

integerise function
EvaluatePrior

EvaluatePrior function
fftinterpolate

fftinterpolate function
autocorrMultitype

autocorrMultitype function
MALAlgcpMultitypeSpatial.PlusPars

MALAlgcpMultitypeSpatial.PlusPars function
selectObsWindow.stppp

selectObsWindow.stppp function
getZmats

getZmats function
fftinterpolate.fromXYZ

interpolate.fromXYZ function
multiply.list

multiply.list function
neattable

neattable function
betavals

betavals function
meanfield.lgcpPredict

meanfield.lgcpPredict function
lgcpForecast

lgcpForecast function
mcmcProgressTextBar

text bar progress monitor
K.u

K.u function
grid2spts

grid2spts function
circulant.matrix

circulant.matrix function
plot.lgcpQuantiles

plot.lgcpQuantiles function
blockcircbase

blockcircbase function
sparsebase

sparsebase function
stppp.list

stppp.list function
stapp

stapp function
print.dump2dir

print.dump2dir function
plot.fromSPDF

plot.fromSPDF function
print.stapp

print.stapp function
gOverlay

gOverlay function
genFFTgrid

genFFTgrid function
stGPrealisation

stGPrealisation function
getRotation

getRotation function
raster.lgcpgrid

raster.lgcpgrid function
print.mstppp

print.mstppp function
intens.lgcpSimSpatialPlusParameters

intens.lgcpSimSpatialPlusParameters function
stapp.list

stapp.list function
lgcpInits

lgcpInits function
print.lgcpgrid

print.lgcpgrid function
rotmat

rotmat function
g.diff.single

g.diff.single function
updateAMCMC.andrieuthomsh

updateAMCMC.andrieuthomsh function
guessinterp

guessinterp function
is.pow2

is.pow2 function
lgcpPredictAggregateSpatialPlusPars

lgcpPredictAggregateSpatialPlusPars function
transgreen

transgreen function
stapp.SpatialPolygonsDataFrame

stapp.SpatialPolygonsDataFrame function
zvals

zvals function
yvals.lgcpPredict

yvals.lgcpPredict function
summary.mcmc

summary.mcmc function
lgcpSimMultitypeSpatialCovariates

lgcpSimMultitypeSpatialCovariates function
showGrid.stppp

showGrid.stppp function
wtowncoords

Welsh town details: location
target.and.grad.spatialPlusPars

target.and.grad.spatialPlusPars function
lgcpPredictAggregated

lgcpPredictAggregated function
gridav

gridav function
nullAverage

nullAverage function
traceplots

traceplots function
textsummary

textsummary function
loop.mcmc

loop over an iterator
mstppp.list

mstppp.list function
aggCovInfo.Majority

aggCovInfo.Majority function
PriorSpec

PriorSpec function
image.lgcpgrid

image.lgcpgrid function
wtowns

Welsh town details: population
lgcpPredictMultitypeSpatialPlusPars

lgcpPredictMultitypeSpatialPlusPars function
wpopdata

Population of Welsh counties
varfield.lgcpPredictINLA

varfield.lgcpPredictINLA function
spatialAtRisk.SpatialGridDataFrame

spatialAtRisk.SpatialGridDataFrame function
as.owin.stapp

as.owin.stapp function
mcmcProgressTk

graphical progress monitor
varfield

varfield function
mcmcLoop

iterator for MCMC loops
lgcpgrid.matrix

lgcpgrid.matrix function
clearinterp

clearinterp function
quantile.lgcpPredict

quantile.lgcpPredict function
plot.mstppp

plot.mstppp function
zvals.SpatialGridDataFrame

zvals.SpatialGridDataFrame function
spatialAtRisk.default

spatialAtRisk.default function
Extract.stppp

Extract.stppp function
neigh2D

neigh2D function
transred

transred function
hvals.lgcpPredict

hvals.lgcpPredict function
smultiply.list

smultiply.list function
CovParameters

CovParameters function
xvals.default

xvals.default function
summary.lgcpgrid

summary.lgcpgrid function
paramprecbase

paramprecbase function
exceedProbsAggregated

exceedProbsAggregated function
discreteWindow

discreteWindow function
plot.temporalAtRisk

plot.temporalAtRisk function
cov.interp.fft

cov.interp.fft function
seintens.lgcpPredict

seintens.lgcpPredict function
muEst

muEst function
serr

serr function
spatialIntensities.fromSPDF

spatialIntensities.fromSPDF function
print.lgcpPredict

print.lgcpPredict function
spatialparsEst

spatialparsEst function
spatialIntensities

spatialIntensities function
density.stppp

density.stppp function
touchingowin

touchingowin function
target.and.grad.SpatioTemporalPlusPars

target.and.grad.SpatioTemporalPlusPars function
yvals.default

yvals.default function
target.and.grad.spatial

target.and.grad.spatial function
spatialAtRisk

spatialAtRisk function
my.KinhomAverage

my.KinhomAverage function
postcov

postcov function
mstppp.stppp

mstppp.stppp function
postcov.lgcpPredictMultitypeSpatialPlusParameters

postcov.lgcpPredictMultitypeSpatialPlusParameters function
expectation.lgcpPredict

expectation.lgcpPredict function
serr.lgcpPredict

serr.lgcpPredict function
addTemporalCovariates

addTemporalCovariates function
target.and.grad.AggregateSpatialPlusPars

target.and.grad.AggregateSpatialPlusPars function
aggregateCovariateInfo

aggregateCovariateInfo function
nullFunction

nullFunction function
temporalAtRisk.function

temporalAtRisk.function function
intens.lgcpPredict

intens.lgcpPredict function
xvals.SpatialGridDataFrame

xvals.SpatialGridDataFrame function
GAreturnvalue.nullAverage

GAreturnvalue.nullAverage function##'
PriorSpec.list

PriorSpec.list function
samplePosterior

samplePosterior function
yvals

yvals function
nextStep

next step of an MCMC chain
lgcpvignette

lgcpvignette function
fftinterpolate.fromSPDF

fftinterpolate.fromSPDF function
seintens

seintens function
varfield.lgcpPredict

varfield.lgcpPredict function
temporalAtRisk.numeric

temporalAtRisk.numeric function
at

at function
lgcpbayes

lgcpbayes function
zvals.default

zvals.default function
plot.lgcpPredict

plot.lgcpPredict function
selectObsWindow.default

selectObsWindow.default function
is.retain

do we retain this iteration?
circulant.numeric

circulant.numeric function
as.im.fromFunction

as.im.fromFunction function
as.stppp

as.stppp function
lgcpPredictSpatialPlusPars

lgcpPredictSpatialPlusPars function
checkObsWin

checkObsWin function
xvals

xvals function
mcmctrace.lgcpPredict

mcmctrace.lgcpPredict function
postcov.lgcpPredictAggregateSpatialPlusParameters

postcov.lgcpPredictAggregateSpatialPlusParameters function
mstppp

mstppp function
chooseCellwidth

chooseCellwidth function
rr

rr function
mcmctrace

mcmctrace function
updateAMCMC.constanth

updateAMCMC.constanth function
print.fromSPDF

print.fromSPDF function
spatialAtRisk.function

spatialAtRisk.function function
postcov.lgcpPredictSpatioTemporalPlusParameters

postcov.lgcpPredictSpatioTemporalPlusParameters function
yvals.fromXYZ

yvals.fromXYZ function
stppp

stppp function
getCovParameters

getCovParameters function
getCovParameters.list

getCovParameters.list function
print.gridaverage

print.gridaverage function
plot.fromXYZ

plot.fromXYZ function
spatialIntensities.fromXYZ

spatialIntensities.fromXYZ function
intens.lgcpSimMultitypeSpatialPlusParameters

intens.lgcpSimMultitypeSpatialPlusParameters function
quantile.lgcpgrid

quantile.lgcpgrid function
plot.lgcpgrid

plot.lgcpgrid function
txtProgressBar2

A text progress bar with label
gridav.lgcpPredict

gridav.lgcpPredict function
stppp.ppp

stppp.ppp function
identifygrid

identifygrid function
thetaEst

thetaEst function
gridfun.lgcpPredict

gridfun.lgcpPredict function
showGrid.lgcpPredict

showGrid.lgcpPredict function
window.lgcpPredict

window.lgcpPredict function
spatialAtRisk.lgcpgrid

spatialAtRisk.lgcpgrid function
lgcpPrior

lgcpPrior function
numCases

numCases function
loc2poly

loc2poly function
plotExceed

plotExceed function
setoutput

setoutput function
circulant

circulant function
spatialAtRisk.im

spatialAtRisk.im function
postcov.lgcpPredictSpatialOnlyPlusParameters

postcov.lgcpPredictSpatialOnlyPlusParameters function
computeGradtruncSpatioTemporal

computeGradtruncSpatioTemporal function
getRotation.default

getRotation.default function
target.and.grad.MultitypespatialPlusPars

target.and.grad.MultitypespatialPlusPars function
print.fromFunction

print.fromFunction function
target.and.grad.spatiotemporal

target.and.grad.spatiotemporal function
grid2spdf

grid2spdf function
temporalAtRisk

temporalAtRisk function
transblack

transblack function
roteffgain

roteffgain function
iteration

iteration number
getup

getup function
lambdaEst.ppp

lambdaEst.ppp function
plot.mcmcdiag

plot.mcmcdiag function
lgcpgrid.array

lgcpgrid.array function
plot.stppp

plot.stppp function
GAinitialise.MonteCarloAverage

GAinitialise.MonteCarloAverage function
MALAlgcpSpatial.PlusPars

MALAlgcpSpatial.PlusPars function
GaussianPrior

GaussianPrior function
selectObsWindow

selectObsWindow function
BetaParameters

BetaParameters function
GFreturnvalue.dump2dir

GFreturnvalue.dump2dir function
setTxtProgressBar2

set the progress bar
resetLoop

reset iterator
MALAlgcpSpatial

MALAlgcpSpatial function
covEffects

covEffects function
spatialAtRisk.fromXYZ

spatialAtRisk.fromXYZ function
as.array.lgcpgrid

as.array.lgcpgrid function
aggCovInfo

aggCovInfo function
updateAMCMC

updateAMCMC function
discreteWindow.lgcpPredict

discreteWindow.lgcpPredict function
extendspatialAtRisk

extendspatialAtRisk function
grid2spoly

grid2spoly function
as.owinlist

as.owinlist function
interptypes

interptypes function
lgcpPredict

lgcpPredict function
initialiseAMCMC

initialiseAMCMC function
my.ginhomAverage

my.ginhomAverage function
lgcpgrid.list

lgcpgrid.list function
plotExceed.array

plotExceed.array function
plotExceed.lgcpPredict

plotExceed.lgcpPredict function
paramprec

paramprec function
yvals.SpatialGridDataFrame

yvals.SpatialGridDataFrame function
plotit

plotit function
zvals.fromXYZ

zvals.fromXYZ function
showGrid.default

showGrid.default function
osppp2latlon

osppp2latlon function
toral.cov.mat

toral.cov.mat function
extract.lgcpPredict

extract.lgcpPredict function
GAfinalise

GAfinalise function
LogGaussianPrior

LogGaussianPrior function
as.im.fromSPDF

as.im.fromSPDF function
as.im.fromXYZ

as.im.fromXYZ function
extract

extract function
identify.lgcpPredict

identify.lgcpPredict function
mcmcProgressPrint

printing progress monitor
minimum.contrast

minimum.contrast function
meanfield.lgcpPredictINLA

meanfield.lgcpPredictINLA function
plot.lgcpAutocorr

plot.lgcpAutocorr function
rgauss

rgauss function