Last chance! 50% off unlimited learning
Sale ends in
0
d
09
h
55
m
54
s
Buy Now
Rdocumentation
powered by
Learn R Programming
⚠️
There's a newer version (1.8) of this package.
Take me there.
lgcp
Copy Link
Link to current version
Version
Version
1.8
1.6
1.5
1.4
1.3-15
1.3-14
1.3-13
1.3-11
1.3-9
1.3-8
1.3-7
1.3-6
1.3-4
1.3-3
1.3-2
1.3-1
1.01
1.0
0.9-7
0.9-5
0.9-4-2
0.9-3
0.9-2
0.9-1
0.9-0
Install
install.packages('lgcp')
Monthly Downloads
829
Version
1.5
License
GPL-2 | GPL-3
Maintainer
Benjamin Taylor
Last Published
May 22nd, 2018
Functions in lgcp (1.5)
Search all functions
GFfinalise.dump2dir
GFfinalise.dump2dir function
GAreturnvalue.nullAverage
GAreturnvalue.nullAverage function##'
GAfinalise.nullAverage
GAfinalise.nullAverage function
GFfinalise.nullFunction
GFfinalise.nullFunction function
GFinitialise.nullFunction
GFinitialise.nullFunction function
GFreturnvalue.nullFunction
GFreturnvalue.nullFunction function
GFupdate.nullFunction
GFupdate.nullFunction function
GAreturnvalue
GAreturnvalue function
GFreturnvalue.dump2dir
GFreturnvalue.dump2dir function
GFinitialise.dump2dir
GFinitialise.dump2dir function
GPdrv
GPdrv function
GFinitialise
GFinitialise function
GFfinalise
GFfinalise function
affine.SpatialPolygonsDataFrame
affine.SpatialPolygonsDataFrame function
aggCovInfo.ArealWeightedMean
aggCovInfo.ArealWeightedMean function
GammafromY
GammafromY function
GPdrv2_Multitype
GPdrv2_Multitype function
add.list
add.list function
GPdrv2
GPdrv2 function
addTemporalCovariates
addTemporalCovariates function
as.SpatialGridDataFrame.fromXYZ
as.SpatialGridDataFrame.fromXYZ function
as.SpatialPixelsDataFrame
as.SpatialPixelsDataFrame function
as.SpatialPixelsDataFrame.lgcpgrid
as.SpatialPixelsDataFrame.lgcpgrid function
MALAlgcp
MALAlgcp function
MALAlgcpSpatial.PlusPars
MALAlgcpSpatial.PlusPars function
MALAlgcpSpatial
MALAlgcpSpatial function
LogGaussianPrior
LogGaussianPrior function
as.SpatialGridDataFrame
as.SpatialGridDataFrame function
affine.stppp
affine.stppp function
affine.fromFunction
affine.fromFunction function
GaussianPrior
GaussianPrior function
as.owinlist
as.owinlist function
GFupdate
GFupdate function
GPlist2array
GPlist2array function
YfromGamma
YfromGamma function
GFupdate.dump2dir
GFupdate.dump2dir function
SpikedExponentialCovFct
SpikedExponentialCovFct function
MALAlgcpAggregateSpatial.PlusPars
MALAlgcpAggregateSpatial.PlusPars function
aggregateCovariateInfo
aggregateCovariateInfo function
as.owinlist.SpatialPolygonsDataFrame
as.owinlist.SpatialPolygonsDataFrame function
constantInTime
constantInTime function
aggCovInfo
aggCovInfo function
as.owinlist.stapp
as.owinlist.stapp function
as.ppp.mstppp
as.ppp.mstppp function
GPrealisation
GPrealisation function
MALAlgcpSpatioTemporal.PlusPars
MALAlgcpSpatioTemporal.PlusPars function
K.u
K.u function
MALAlgcpMultitypeSpatial.PlusPars
MALAlgcpMultitypeSpatial.PlusPars function
K.diff.single
K.diff.single function
PriorSpec
PriorSpec function
expectation.lgcpPredict
expectation.lgcpPredict function
assigninterp
assigninterp function
PriorSpec.list
PriorSpec.list function
aggregateformulaList
aggregateformulaList function
K.val
K.val function
as.stppp.stapp
as.stppp.stapp function
discreteWindow
discreteWindow function
constantInTime.numeric
constantInTime.numeric function
KinhomAverage
KinhomAverage function
discreteWindow.lgcpPredict
discreteWindow.lgcpPredict function
expectation.lgcpPredictSpatialOnlyPlusParameters
expectation.lgcpPredictSpatialOnlyPlusParameters function
andrieuthomsh
andrieuthomsh function
aggCovInfo.Majority
aggCovInfo.Majority function
aggCovInfo.ArealWeightedSum
aggCovInfo.ArealWeightedSum function
MonteCarloAverage
MonteCarloAverage function
affine.fromSPDF
affine.fromSPDF function
exceedProbsAggregated
exceedProbsAggregated function
as.list.lgcpgrid
as.list.lgcpgrid function
fftgrid
fftgrid function
as.owin.stapp
as.owin.stapp function
RandomFieldsCovFct
RandomFieldsCovFct function
as.fromXYZ.fromFunction
as.fromXYZ.fromFunction function
affine.fromXYZ
affine.fromXYZ function
as.array.lgcpgrid
as.array.lgcpgrid function
fftinterpolate
fftinterpolate function
SpatialPolygonsDataFrame.stapp
SpatialPolygonsDataFrame.stapp function
as.im.fromXYZ
as.im.fromXYZ function
as.im.fromSPDF
as.im.fromSPDF function
as.fromXYZ
as.fromXYZ function
getRotation
getRotation function
getRotation.default
getRotation.default function
expectation
expectation function
grid2spoly
grid2spoly function
as.im.fromFunction
as.im.fromFunction function
as.ppp.stppp
as.ppp.stppp function
getCellCounts
getCellCounts function
autocorrMultitype
autocorrMultitype function
at
at function
getCounts
getCounts function
cov.interp.fft
cov.interp.fft function
getlgcpPredictSpatialINLA
getlgcpPredictSpatialINLA function
clearinterp
clearinterp function
bt.scalar
bt.scalar function
autocorr
autocorr function
as.stppp
as.stppp function
computeGradtruncSpatial
computeGradtruncSpatial function
grid2spts
grid2spts function
covEffects
covEffects function
hasNext.iter
hasNext.iter function
fftinterpolate.fromFunction
fftinterpolate.fromFunction function
blockcircbase
blockcircbase function
computeGradtruncSpatioTemporal
computeGradtruncSpatioTemporal function
fftinterpolate.fromSPDF
fftinterpolate.fromSPDF function
betavals
betavals function
hvals
hvals function
getCovParameters.GPrealisation
getCovParameters.GPrealisation function
blockcircbaseFunction
blockcircbaseFunction function
getpolyol
getpolyol function
checkObsWin
checkObsWin function
condProbs
condProbs function
chooseCellwidth
chooseCellwidth function
getCovParameters
getCovParameters function
guessinterp
guessinterp function
gridav.lgcpPredict
gridav.lgcpPredict function
identifygrid
identifygrid function
circulant.matrix
circulant.matrix function
image.lgcpgrid
image.lgcpgrid function
hasNext
generic hasNext method
integerise.stppp
integerise.stppp function
circulant.numeric
circulant.numeric function
gridfun
gridfun function
integerise.mstppp
integerise.mstppp function
intens
intens function
mcmcpars
mcmcpars function
d.func
d.func function
constantInTime.stppp
constantInTime.stppp function
density.stppp
density.stppp function
initialiseAMCMC.constanth
initaliseAMCMC.constanth function
is.SPD
is.SPD function
extract
extract function
extract.lgcpPredict
extract.lgcpPredict function
dump2dir
dump2dir function
intens.lgcpPredict
intens.lgcpPredict function
constanth
constanth function
is.burnin
is this a burn-in iteration?
iteration
iteration number
eigenfrombase
eigenfrombase function
integerise
integerise function
lgcpSim
lgcpSim function
interptypes
interptypes function
circulant
circulant function
lgcpSimMultitypeSpatialCovariates
lgcpSimMultitypeSpatialCovariates function
etavals
etavals function
lambdaEst
lambdaEst function
paramprec
paramprec function
lgcp-package
lgcp
lgcpgrid
lgcpgrid function
paramprecbase
paramprecbase function
mcmctrace
mcmctrace function
fftmultiply
fftmultiply function
exponentialCovFct
exponentialCovFct function
plot.mstppp
plot.mstppp function
inversebase
inversebase function
fftinterpolate.fromXYZ
interpolate.fromXYZ function
extendspatialAtRisk
extendspatialAtRisk function
lgcpbayes
lgcpbayes function
formulaList
formulaList function
lgcpSimSpatial
lgcpSimSpatial function
getLHSformulaList
getLHSformulaList function
exceedProbs
exceedProbs function
gOverlay
gOverlay function
lgcpForecast
lgcpForecast function
getCovParameters.list
getCovParameters.list function
genFFTgrid
genFFTgrid function
lgcpgrid.matrix
lgcpgrid.matrix function
grid2spdf
grid2spdf function
plot.stppp
plot.stppp function
lgcppars
lgcppars function
maternCovFct25
maternCovFct25 function
g.diff.single
g.diff.single function
postcov.lgcpPredictSpatialOnlyPlusParameters
postcov.lgcpPredictSpatialOnlyPlusParameters function
getZmat
getZmat function
postcov.lgcpPredictSpatioTemporalPlusParameters
postcov.lgcpPredictSpatioTemporalPlusParameters function
lgcpSimSpatialCovariates
lgcpSimSpatialCovariates function
grid2spix
grid2spix function
mcmcProgressNone
null progress monitor
mstppp.ppp
mstppp.ppp function
print.lgcpPredict
print.lgcpPredict function
gridInWindow
gridInWindow function
meanfield.lgcpPredict
meanfield.lgcpPredict function
mcmcProgressPrint
printing progress monitor
getRotation.stppp
getRotation.stppp function
print.gridaverage
print.gridaverage function
getZmats
getZmats function
getinterp
getinterp function
gridav
gridav function
samplePosterior
samplePosterior function
mstppp.stppp
mstppp.stppp function
hvals.lgcpPredict
hvals.lgcpPredict function
mcmcLoop
iterator for MCMC loops
getup
getup function
meanfield.lgcpPredictINLA
meanfield.lgcpPredictINLA function
resetLoop
reset iterator
rgauss
rgauss function
ginhomAverage
ginhomAverage function
gridfun.lgcpPredict
gridfun.lgcpPredict function
sparsebase
sparsebase function
spatialAtRisk
spatialAtRisk function
spatialIntensities
spatialIntensities function
lgcpPredictAggregated
lgcpPredictAggregated function
lgcpPredictAggregateSpatialPlusPars
lgcpPredictAggregateSpatialPlusPars function
identify.lgcpPredict
identify.lgcpPredict function
segProbs
segProbs function
is.pow2
is.pow2 function
parautocorr
parautocorr function
lgcpPredictSpatioTemporalPlusPars
lgcpPredictSpatioTemporalPlusPars function
gu
gu function
my.ginhomAverage
my.ginhomAverage function
my.KinhomAverage
my.KinhomAverage function
nextStep
next step of an MCMC chain
plotExceed.array
plotExceed.array function
spatialIntensities.fromSPDF
spatialIntensities.fromSPDF function
is.retain
do we retain this iteration?
plotExceed.lgcpPredict
plotExceed.lgcpPredict function
lgcpPrior
lgcpPrior function
print.fromXYZ
print.fromXYZ function
quantile.lgcpPredict
quantile.lgcpPredict function
plot.fromSPDF
plot.fromSPDF function
loop.mcmc
loop over an iterator
parsummary
parsummary function
plot.fromXYZ
plot.fromXYZ function
ltar
ltar function
print.fromSPDF
print.fromSPDF function
mcmcProgressTk
graphical progress monitor
rotmat
rotmat function
initialiseAMCMC.andrieuthomsh
initaliseAMCMC.andrieuthomsh function
minimum.contrast
minimum.contrast function
priorpost
priorpost function
nullAverage
nullAverage function
mcmcProgressTextBar
text bar progress monitor
roteffgain
roteffgain function
initialiseAMCMC
initialiseAMCMC function
minimum.contrast.spatiotemporal
minimum.contrast.spatiotemporal function
intens.lgcpSimMultitypeSpatialPlusParameters
intens.lgcpSimMultitypeSpatialPlusParameters function
nullFunction
nullFunction function
print.temporalAtRisk
print.temporalAtRisk function
print.fromFunction
print.fromFunction function
print.stppp
print.stppp function
print.dump2dir
print.dump2dir function
numCases
numCases function
textsummary
textsummary function
lgcpInits
lgcpInits function
lgcpPredict
lgcpPredict function
serr.lgcpPredict
serr.lgcpPredict function
plot.lgcpZmat
plot.lgcpZmat function
lambdaEst.ppp
lambdaEst.ppp function
quantile.lgcpgrid
quantile.lgcpgrid function
intens.lgcpSimSpatialPlusParameters
intens.lgcpSimSpatialPlusParameters function
temporalAtRisk.numeric
temporalAtRisk.numeric function
txtProgressBar2
A text progress bar with label
plot.lgcpQuantiles
plot.lgcpQuantiles function
plotit
plotit function
raster.lgcpgrid
raster.lgcpgrid function
lgcpPredictMultitypeSpatialPlusPars
lgcpPredictMultitypeSpatialPlusPars function
updateAMCMC
updateAMCMC function
setTxtProgressBar2
set the progress bar
lambdaEst.stppp
lambdaEst.stppp function
postcov
postcov function
lgcpPredictSpatialINLA
lgcpPredictSpatialINLA function
spatialAtRisk.SpatialPolygonsDataFrame
spatialAtRisk.SpatialPolygonsDataFrame function
spatialAtRisk.SpatialGridDataFrame
spatialAtRisk.SpatialGridDataFrame function
lgcpPredictSpatialPlusPars
lgcpPredictSpatialPlusPars function
lgcpvignette
lgcpvignette function
print.lgcpgrid
print.lgcpgrid function
stGPrealisation
stGPrealisation function
yvals.lgcpPredict
yvals.lgcpPredict function
zvals
zvals function
spatialAtRisk.bivden
spatialAtRisk.bivden function
lgcpPredictSpatial
lgcpPredictSpatial function
spatialAtRisk.default
spatialAtRisk.default function
lgcpgrid.list
lgcpgrid.list function
loc2poly
loc2poly function
lgcpgrid.array
lgcpgrid.array function
matchcovariance
matchcovariance function
seintens
seintens function
zvals.SpatialGridDataFrame
zvals.SpatialGridDataFrame function
target.and.grad.MultitypespatialPlusPars
target.and.grad.MultitypespatialPlusPars function
mstppp.list
mstppp.list function
stapp
stapp function
print.mcmc
print.mcmc function
seintens.lgcpPredict
seintens.lgcpPredict function
rr.lgcpPredict
rr.lgcpPredict function
meanfield
meanfield function
spatialIntensities.fromXYZ
spatialIntensities.fromXYZ function
spatialparsEst
spatialparsEst function
maternCovFct15
maternCovFct15 function
target.and.grad.SpatioTemporalPlusPars
target.and.grad.SpatioTemporalPlusPars function
mstppp
mstppp function
rr
rr function
varfield
varfield function
stppp
stppp function
touchingowin
touchingowin function
setoutput
setoutput function
mcmctrace.lgcpPredict
mcmctrace.lgcpPredict function
traceplots
traceplots function
muEst
muEst function
zvals.default
zvals.default function
neattable
neattable function
multiply.list
multiply.list function
varfield.lgcpPredict
varfield.lgcpPredict function
showGrid
showGrid function
plot.lgcpPredict
plot.lgcpPredict function
xvals.SpatialGridDataFrame
xvals.SpatialGridDataFrame function
postcov.lgcpPredictAggregateSpatialPlusParameters
postcov.lgcpPredictAggregateSpatialPlusParameters function
neigh2D
neigh2D function
osppp2latlon
osppp2latlon function
spatialAtRisk.fromXYZ
spatialAtRisk.fromXYZ function
plot.lgcpAutocorr
plot.lgcpAutocorr function
xvals.default
xvals.default function
plot.temporalAtRisk
plot.temporalAtRisk function
postcov.lgcpPredictMultitypeSpatialPlusParameters
postcov.lgcpPredictMultitypeSpatialPlusParameters function
plotExceed
plotExceed function
summary.mcmc
summary.mcmc function
print.mstppp
print.mstppp function
stppp.list
stppp.list function
print.stapp
print.stapp function
temporalAtRisk.function
temporalAtRisk.function function
osppp2merc
osppp2merc function
spatialAtRisk.function
spatialAtRisk.function function
plot.lgcpgrid
plot.lgcpgrid function
temporalAtRisk
temporalAtRisk function
target.and.grad.AggregateSpatialPlusPars
target.and.grad.AggregateSpatialPlusPars function
selectObsWindow
selectObsWindow function
rescale.mstppp
rescale.mstppp function
showGrid.stppp
showGrid.stppp function
plot.mcmcdiag
plot.mcmcdiag function
varfield.lgcpPredictINLA
varfield.lgcpPredictINLA function
transblue
transblue function
transred
transred function
selectObsWindow.stppp
selectObsWindow.stppp function
window.lgcpPredict
window.lgcpPredict function
selectObsWindow.default
selectObsWindow.default function
transblack
transblack function
smultiply.list
smultiply.list function
yvals.default
yvals.default function
stapp.SpatialPolygonsDataFrame
stapp.SpatialPolygonsDataFrame function
tempRaster
tempRaster function
rescale.stppp
rescale.stppp function
thetaEst
thetaEst function
stapp.list
stapp.list function
toral.cov.mat
toral.cov.mat function
transgreen
transgreen function
showGrid.default
showGrid.default function
wpopdata
Population of Welsh counties
spatialAtRisk.im
spatialAtRisk.im function
yvals
yvals function
target.and.grad.spatiotemporal
target.and.grad.spatiotemporal function
wtowns
Welsh town details: population
serr
serr function
yvals.fromXYZ
yvals.fromXYZ function
xvals
xvals function
zvals.fromXYZ
zvals.fromXYZ function
wtowncoords
Welsh town details: location
showGrid.lgcpPredict
showGrid.lgcpPredict function
spatialAtRisk.lgcpgrid
spatialAtRisk.lgcpgrid function
stppp.ppp
stppp.ppp function
yvals.SpatialGridDataFrame
yvals.SpatialGridDataFrame function
summary.lgcpgrid
summary.lgcpgrid function
target.and.grad.spatial
target.and.grad.spatial function
xvals.lgcpPredict
xvals.lgcpPredict function
target.and.grad.spatialPlusPars
target.and.grad.spatialPlusPars function
updateAMCMC.andrieuthomsh
updateAMCMC.andrieuthomsh function
updateAMCMC.constanth
updateAMCMC.constanth function
xvals.fromXYZ
xvals.fromXYZ function
Cvb
Cvb function
Extract.stppp
Extract.stppp function
CovParameters
CovParameters function
CovFunction.function
CovFunction.function function
GAfinalise.MonteCarloAverage
GAfinalise.MonteCarloAverage function
EvaluatePrior
EvaluatePrior function
GAinitialise.nullAverage
GAinitialise.nullAverage function
GAupdate
GAupdate function
GAupdate.MonteCarloAverage
GAupdate.MonteCarloAverage function
GAinitialise.MonteCarloAverage
GAinitialise.MonteCarloAverage function
CovFunction
CovFunction function
C.diff.single.im
C.diff.single.im function
GAupdate.nullAverage
GAupdate.nullAverage function
BetaParameters
BetaParameters function
Extract.mstppp
Extract.mstppp function
GAfinalise
GAfinalise function
GAinitialise
GAinitialise function
GFreturnvalue
GFreturnvalue function
GAreturnvalue.MonteCarloAverage
GAreturnvalue.MonteCarloAverage function