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lgcp

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Version

Install

install.packages('lgcp')

Monthly Downloads

829

Version

1.5

License

GPL-2 | GPL-3

Maintainer

Last Published

May 22nd, 2018

Functions in lgcp (1.5)

GFfinalise.dump2dir

GFfinalise.dump2dir function
GAreturnvalue.nullAverage

GAreturnvalue.nullAverage function##'
GAfinalise.nullAverage

GAfinalise.nullAverage function
GFfinalise.nullFunction

GFfinalise.nullFunction function
GFinitialise.nullFunction

GFinitialise.nullFunction function
GFreturnvalue.nullFunction

GFreturnvalue.nullFunction function
GFupdate.nullFunction

GFupdate.nullFunction function
GAreturnvalue

GAreturnvalue function
GFreturnvalue.dump2dir

GFreturnvalue.dump2dir function
GFinitialise.dump2dir

GFinitialise.dump2dir function
GPdrv

GPdrv function
GFinitialise

GFinitialise function
GFfinalise

GFfinalise function
affine.SpatialPolygonsDataFrame

affine.SpatialPolygonsDataFrame function
aggCovInfo.ArealWeightedMean

aggCovInfo.ArealWeightedMean function
GammafromY

GammafromY function
GPdrv2_Multitype

GPdrv2_Multitype function
add.list

add.list function
GPdrv2

GPdrv2 function
addTemporalCovariates

addTemporalCovariates function
as.SpatialGridDataFrame.fromXYZ

as.SpatialGridDataFrame.fromXYZ function
as.SpatialPixelsDataFrame

as.SpatialPixelsDataFrame function
as.SpatialPixelsDataFrame.lgcpgrid

as.SpatialPixelsDataFrame.lgcpgrid function
MALAlgcp

MALAlgcp function
MALAlgcpSpatial.PlusPars

MALAlgcpSpatial.PlusPars function
MALAlgcpSpatial

MALAlgcpSpatial function
LogGaussianPrior

LogGaussianPrior function
as.SpatialGridDataFrame

as.SpatialGridDataFrame function
affine.stppp

affine.stppp function
affine.fromFunction

affine.fromFunction function
GaussianPrior

GaussianPrior function
as.owinlist

as.owinlist function
GFupdate

GFupdate function
GPlist2array

GPlist2array function
YfromGamma

YfromGamma function
GFupdate.dump2dir

GFupdate.dump2dir function
SpikedExponentialCovFct

SpikedExponentialCovFct function
MALAlgcpAggregateSpatial.PlusPars

MALAlgcpAggregateSpatial.PlusPars function
aggregateCovariateInfo

aggregateCovariateInfo function
as.owinlist.SpatialPolygonsDataFrame

as.owinlist.SpatialPolygonsDataFrame function
constantInTime

constantInTime function
aggCovInfo

aggCovInfo function
as.owinlist.stapp

as.owinlist.stapp function
as.ppp.mstppp

as.ppp.mstppp function
GPrealisation

GPrealisation function
MALAlgcpSpatioTemporal.PlusPars

MALAlgcpSpatioTemporal.PlusPars function
K.u

K.u function
MALAlgcpMultitypeSpatial.PlusPars

MALAlgcpMultitypeSpatial.PlusPars function
K.diff.single

K.diff.single function
PriorSpec

PriorSpec function
expectation.lgcpPredict

expectation.lgcpPredict function
assigninterp

assigninterp function
PriorSpec.list

PriorSpec.list function
aggregateformulaList

aggregateformulaList function
K.val

K.val function
as.stppp.stapp

as.stppp.stapp function
discreteWindow

discreteWindow function
constantInTime.numeric

constantInTime.numeric function
KinhomAverage

KinhomAverage function
discreteWindow.lgcpPredict

discreteWindow.lgcpPredict function
expectation.lgcpPredictSpatialOnlyPlusParameters

expectation.lgcpPredictSpatialOnlyPlusParameters function
andrieuthomsh

andrieuthomsh function
aggCovInfo.Majority

aggCovInfo.Majority function
aggCovInfo.ArealWeightedSum

aggCovInfo.ArealWeightedSum function
MonteCarloAverage

MonteCarloAverage function
affine.fromSPDF

affine.fromSPDF function
exceedProbsAggregated

exceedProbsAggregated function
as.list.lgcpgrid

as.list.lgcpgrid function
fftgrid

fftgrid function
as.owin.stapp

as.owin.stapp function
RandomFieldsCovFct

RandomFieldsCovFct function
as.fromXYZ.fromFunction

as.fromXYZ.fromFunction function
affine.fromXYZ

affine.fromXYZ function
as.array.lgcpgrid

as.array.lgcpgrid function
fftinterpolate

fftinterpolate function
SpatialPolygonsDataFrame.stapp

SpatialPolygonsDataFrame.stapp function
as.im.fromXYZ

as.im.fromXYZ function
as.im.fromSPDF

as.im.fromSPDF function
as.fromXYZ

as.fromXYZ function
getRotation

getRotation function
getRotation.default

getRotation.default function
expectation

expectation function
grid2spoly

grid2spoly function
as.im.fromFunction

as.im.fromFunction function
as.ppp.stppp

as.ppp.stppp function
getCellCounts

getCellCounts function
autocorrMultitype

autocorrMultitype function
at

at function
getCounts

getCounts function
cov.interp.fft

cov.interp.fft function
getlgcpPredictSpatialINLA

getlgcpPredictSpatialINLA function
clearinterp

clearinterp function
bt.scalar

bt.scalar function
autocorr

autocorr function
as.stppp

as.stppp function
computeGradtruncSpatial

computeGradtruncSpatial function
grid2spts

grid2spts function
covEffects

covEffects function
hasNext.iter

hasNext.iter function
fftinterpolate.fromFunction

fftinterpolate.fromFunction function
blockcircbase

blockcircbase function
computeGradtruncSpatioTemporal

computeGradtruncSpatioTemporal function
fftinterpolate.fromSPDF

fftinterpolate.fromSPDF function
betavals

betavals function
hvals

hvals function
getCovParameters.GPrealisation

getCovParameters.GPrealisation function
blockcircbaseFunction

blockcircbaseFunction function
getpolyol

getpolyol function
checkObsWin

checkObsWin function
condProbs

condProbs function
chooseCellwidth

chooseCellwidth function
getCovParameters

getCovParameters function
guessinterp

guessinterp function
gridav.lgcpPredict

gridav.lgcpPredict function
identifygrid

identifygrid function
circulant.matrix

circulant.matrix function
image.lgcpgrid

image.lgcpgrid function
hasNext

generic hasNext method
integerise.stppp

integerise.stppp function
circulant.numeric

circulant.numeric function
gridfun

gridfun function
integerise.mstppp

integerise.mstppp function
intens

intens function
mcmcpars

mcmcpars function
d.func

d.func function
constantInTime.stppp

constantInTime.stppp function
density.stppp

density.stppp function
initialiseAMCMC.constanth

initaliseAMCMC.constanth function
is.SPD

is.SPD function
extract

extract function
extract.lgcpPredict

extract.lgcpPredict function
dump2dir

dump2dir function
intens.lgcpPredict

intens.lgcpPredict function
constanth

constanth function
is.burnin

is this a burn-in iteration?
iteration

iteration number
eigenfrombase

eigenfrombase function
integerise

integerise function
lgcpSim

lgcpSim function
interptypes

interptypes function
circulant

circulant function
lgcpSimMultitypeSpatialCovariates

lgcpSimMultitypeSpatialCovariates function
etavals

etavals function
lambdaEst

lambdaEst function
paramprec

paramprec function
lgcp-package

lgcp
lgcpgrid

lgcpgrid function
paramprecbase

paramprecbase function
mcmctrace

mcmctrace function
fftmultiply

fftmultiply function
exponentialCovFct

exponentialCovFct function
plot.mstppp

plot.mstppp function
inversebase

inversebase function
fftinterpolate.fromXYZ

interpolate.fromXYZ function
extendspatialAtRisk

extendspatialAtRisk function
lgcpbayes

lgcpbayes function
formulaList

formulaList function
lgcpSimSpatial

lgcpSimSpatial function
getLHSformulaList

getLHSformulaList function
exceedProbs

exceedProbs function
gOverlay

gOverlay function
lgcpForecast

lgcpForecast function
getCovParameters.list

getCovParameters.list function
genFFTgrid

genFFTgrid function
lgcpgrid.matrix

lgcpgrid.matrix function
grid2spdf

grid2spdf function
plot.stppp

plot.stppp function
lgcppars

lgcppars function
maternCovFct25

maternCovFct25 function
g.diff.single

g.diff.single function
postcov.lgcpPredictSpatialOnlyPlusParameters

postcov.lgcpPredictSpatialOnlyPlusParameters function
getZmat

getZmat function
postcov.lgcpPredictSpatioTemporalPlusParameters

postcov.lgcpPredictSpatioTemporalPlusParameters function
lgcpSimSpatialCovariates

lgcpSimSpatialCovariates function
grid2spix

grid2spix function
mcmcProgressNone

null progress monitor
mstppp.ppp

mstppp.ppp function
print.lgcpPredict

print.lgcpPredict function
gridInWindow

gridInWindow function
meanfield.lgcpPredict

meanfield.lgcpPredict function
mcmcProgressPrint

printing progress monitor
getRotation.stppp

getRotation.stppp function
print.gridaverage

print.gridaverage function
getZmats

getZmats function
getinterp

getinterp function
gridav

gridav function
samplePosterior

samplePosterior function
mstppp.stppp

mstppp.stppp function
hvals.lgcpPredict

hvals.lgcpPredict function
mcmcLoop

iterator for MCMC loops
getup

getup function
meanfield.lgcpPredictINLA

meanfield.lgcpPredictINLA function
resetLoop

reset iterator
rgauss

rgauss function
ginhomAverage

ginhomAverage function
gridfun.lgcpPredict

gridfun.lgcpPredict function
sparsebase

sparsebase function
spatialAtRisk

spatialAtRisk function
spatialIntensities

spatialIntensities function
lgcpPredictAggregated

lgcpPredictAggregated function
lgcpPredictAggregateSpatialPlusPars

lgcpPredictAggregateSpatialPlusPars function
identify.lgcpPredict

identify.lgcpPredict function
segProbs

segProbs function
is.pow2

is.pow2 function
parautocorr

parautocorr function
lgcpPredictSpatioTemporalPlusPars

lgcpPredictSpatioTemporalPlusPars function
gu

gu function
my.ginhomAverage

my.ginhomAverage function
my.KinhomAverage

my.KinhomAverage function
nextStep

next step of an MCMC chain
plotExceed.array

plotExceed.array function
spatialIntensities.fromSPDF

spatialIntensities.fromSPDF function
is.retain

do we retain this iteration?
plotExceed.lgcpPredict

plotExceed.lgcpPredict function
lgcpPrior

lgcpPrior function
print.fromXYZ

print.fromXYZ function
quantile.lgcpPredict

quantile.lgcpPredict function
plot.fromSPDF

plot.fromSPDF function
loop.mcmc

loop over an iterator
parsummary

parsummary function
plot.fromXYZ

plot.fromXYZ function
ltar

ltar function
print.fromSPDF

print.fromSPDF function
mcmcProgressTk

graphical progress monitor
rotmat

rotmat function
initialiseAMCMC.andrieuthomsh

initaliseAMCMC.andrieuthomsh function
minimum.contrast

minimum.contrast function
priorpost

priorpost function
nullAverage

nullAverage function
mcmcProgressTextBar

text bar progress monitor
roteffgain

roteffgain function
initialiseAMCMC

initialiseAMCMC function
minimum.contrast.spatiotemporal

minimum.contrast.spatiotemporal function
intens.lgcpSimMultitypeSpatialPlusParameters

intens.lgcpSimMultitypeSpatialPlusParameters function
nullFunction

nullFunction function
print.temporalAtRisk

print.temporalAtRisk function
print.fromFunction

print.fromFunction function
print.stppp

print.stppp function
print.dump2dir

print.dump2dir function
numCases

numCases function
textsummary

textsummary function
lgcpInits

lgcpInits function
lgcpPredict

lgcpPredict function
serr.lgcpPredict

serr.lgcpPredict function
plot.lgcpZmat

plot.lgcpZmat function
lambdaEst.ppp

lambdaEst.ppp function
quantile.lgcpgrid

quantile.lgcpgrid function
intens.lgcpSimSpatialPlusParameters

intens.lgcpSimSpatialPlusParameters function
temporalAtRisk.numeric

temporalAtRisk.numeric function
txtProgressBar2

A text progress bar with label
plot.lgcpQuantiles

plot.lgcpQuantiles function
plotit

plotit function
raster.lgcpgrid

raster.lgcpgrid function
lgcpPredictMultitypeSpatialPlusPars

lgcpPredictMultitypeSpatialPlusPars function
updateAMCMC

updateAMCMC function
setTxtProgressBar2

set the progress bar
lambdaEst.stppp

lambdaEst.stppp function
postcov

postcov function
lgcpPredictSpatialINLA

lgcpPredictSpatialINLA function
spatialAtRisk.SpatialPolygonsDataFrame

spatialAtRisk.SpatialPolygonsDataFrame function
spatialAtRisk.SpatialGridDataFrame

spatialAtRisk.SpatialGridDataFrame function
lgcpPredictSpatialPlusPars

lgcpPredictSpatialPlusPars function
lgcpvignette

lgcpvignette function
print.lgcpgrid

print.lgcpgrid function
stGPrealisation

stGPrealisation function
yvals.lgcpPredict

yvals.lgcpPredict function
zvals

zvals function
spatialAtRisk.bivden

spatialAtRisk.bivden function
lgcpPredictSpatial

lgcpPredictSpatial function
spatialAtRisk.default

spatialAtRisk.default function
lgcpgrid.list

lgcpgrid.list function
loc2poly

loc2poly function
lgcpgrid.array

lgcpgrid.array function
matchcovariance

matchcovariance function
seintens

seintens function
zvals.SpatialGridDataFrame

zvals.SpatialGridDataFrame function
target.and.grad.MultitypespatialPlusPars

target.and.grad.MultitypespatialPlusPars function
mstppp.list

mstppp.list function
stapp

stapp function
print.mcmc

print.mcmc function
seintens.lgcpPredict

seintens.lgcpPredict function
rr.lgcpPredict

rr.lgcpPredict function
meanfield

meanfield function
spatialIntensities.fromXYZ

spatialIntensities.fromXYZ function
spatialparsEst

spatialparsEst function
maternCovFct15

maternCovFct15 function
target.and.grad.SpatioTemporalPlusPars

target.and.grad.SpatioTemporalPlusPars function
mstppp

mstppp function
rr

rr function
varfield

varfield function
stppp

stppp function
touchingowin

touchingowin function
setoutput

setoutput function
mcmctrace.lgcpPredict

mcmctrace.lgcpPredict function
traceplots

traceplots function
muEst

muEst function
zvals.default

zvals.default function
neattable

neattable function
multiply.list

multiply.list function
varfield.lgcpPredict

varfield.lgcpPredict function
showGrid

showGrid function
plot.lgcpPredict

plot.lgcpPredict function
xvals.SpatialGridDataFrame

xvals.SpatialGridDataFrame function
postcov.lgcpPredictAggregateSpatialPlusParameters

postcov.lgcpPredictAggregateSpatialPlusParameters function
neigh2D

neigh2D function
osppp2latlon

osppp2latlon function
spatialAtRisk.fromXYZ

spatialAtRisk.fromXYZ function
plot.lgcpAutocorr

plot.lgcpAutocorr function
xvals.default

xvals.default function
plot.temporalAtRisk

plot.temporalAtRisk function
postcov.lgcpPredictMultitypeSpatialPlusParameters

postcov.lgcpPredictMultitypeSpatialPlusParameters function
plotExceed

plotExceed function
summary.mcmc

summary.mcmc function
print.mstppp

print.mstppp function
stppp.list

stppp.list function
print.stapp

print.stapp function
temporalAtRisk.function

temporalAtRisk.function function
osppp2merc

osppp2merc function
spatialAtRisk.function

spatialAtRisk.function function
plot.lgcpgrid

plot.lgcpgrid function
temporalAtRisk

temporalAtRisk function
target.and.grad.AggregateSpatialPlusPars

target.and.grad.AggregateSpatialPlusPars function
selectObsWindow

selectObsWindow function
rescale.mstppp

rescale.mstppp function
showGrid.stppp

showGrid.stppp function
plot.mcmcdiag

plot.mcmcdiag function
varfield.lgcpPredictINLA

varfield.lgcpPredictINLA function
transblue

transblue function
transred

transred function
selectObsWindow.stppp

selectObsWindow.stppp function
window.lgcpPredict

window.lgcpPredict function
selectObsWindow.default

selectObsWindow.default function
transblack

transblack function
smultiply.list

smultiply.list function
yvals.default

yvals.default function
stapp.SpatialPolygonsDataFrame

stapp.SpatialPolygonsDataFrame function
tempRaster

tempRaster function
rescale.stppp

rescale.stppp function
thetaEst

thetaEst function
stapp.list

stapp.list function
toral.cov.mat

toral.cov.mat function
transgreen

transgreen function
showGrid.default

showGrid.default function
wpopdata

Population of Welsh counties
spatialAtRisk.im

spatialAtRisk.im function
yvals

yvals function
target.and.grad.spatiotemporal

target.and.grad.spatiotemporal function
wtowns

Welsh town details: population
serr

serr function
yvals.fromXYZ

yvals.fromXYZ function
xvals

xvals function
zvals.fromXYZ

zvals.fromXYZ function
wtowncoords

Welsh town details: location
showGrid.lgcpPredict

showGrid.lgcpPredict function
spatialAtRisk.lgcpgrid

spatialAtRisk.lgcpgrid function
stppp.ppp

stppp.ppp function
yvals.SpatialGridDataFrame

yvals.SpatialGridDataFrame function
summary.lgcpgrid

summary.lgcpgrid function
target.and.grad.spatial

target.and.grad.spatial function
xvals.lgcpPredict

xvals.lgcpPredict function
target.and.grad.spatialPlusPars

target.and.grad.spatialPlusPars function
updateAMCMC.andrieuthomsh

updateAMCMC.andrieuthomsh function
updateAMCMC.constanth

updateAMCMC.constanth function
xvals.fromXYZ

xvals.fromXYZ function
Cvb

Cvb function
Extract.stppp

Extract.stppp function
CovParameters

CovParameters function
CovFunction.function

CovFunction.function function
GAfinalise.MonteCarloAverage

GAfinalise.MonteCarloAverage function
EvaluatePrior

EvaluatePrior function
GAinitialise.nullAverage

GAinitialise.nullAverage function
GAupdate

GAupdate function
GAupdate.MonteCarloAverage

GAupdate.MonteCarloAverage function
GAinitialise.MonteCarloAverage

GAinitialise.MonteCarloAverage function
CovFunction

CovFunction function
C.diff.single.im

C.diff.single.im function
GAupdate.nullAverage

GAupdate.nullAverage function
BetaParameters

BetaParameters function
Extract.mstppp

Extract.mstppp function
GAfinalise

GAfinalise function
GAinitialise

GAinitialise function
GFreturnvalue

GFreturnvalue function
GAreturnvalue.MonteCarloAverage

GAreturnvalue.MonteCarloAverage function