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lgcp

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Version

Install

install.packages('lgcp')

Monthly Downloads

854

Version

1.6

License

GPL-2 | GPL-3

Maintainer

Benjamin Taylor

Last Published

March 6th, 2020

Functions in lgcp (1.6)

EvaluatePrior function

CovFunction.function

CovFunction.function function

Extract.mstppp function

GAfinalise.MonteCarloAverage

GAfinalise.MonteCarloAverage function

CovFunction function

Extract.stppp function

BetaParameters function

GAinitialise.MonteCarloAverage

GAinitialise.MonteCarloAverage function

CovParameters function

GAinitialise function

GAupdate function

GAupdate.MonteCarloAverage

GAupdate.MonteCarloAverage function

GAfinalise.nullAverage

GAfinalise.nullAverage function

C.diff.single.im

C.diff.single.im function

GAupdate.nullAverage

GAupdate.nullAverage function

GAfinalise function

GammafromY function

GaussianPrior function

GFfinalise function

GAinitialise.nullAverage

GAinitialise.nullAverage function

GAreturnvalue function

GFfinalise.dump2dir

GFfinalise.dump2dir function

GFinitialise.nullFunction

GFinitialise.nullFunction function

GAreturnvalue.nullAverage

GAreturnvalue.nullAverage function##'

GFreturnvalue.dump2dir

GFreturnvalue.dump2dir function

GFfinalise.nullFunction

GFfinalise.nullFunction function

GFreturnvalue.nullFunction

GFreturnvalue.nullFunction function

GFupdate function

GFupdate.dump2dir

GFupdate.dump2dir function

KinhomAverage function

SpikedExponentialCovFct

SpikedExponentialCovFct function

YfromGamma function

MALAlgcp function

LogGaussianPrior

LogGaussianPrior function

aggCovInfo function

GPdrv2 function

GFinitialise.dump2dir

GFinitialise.dump2dir function

GAreturnvalue.MonteCarloAverage

GAreturnvalue.MonteCarloAverage function

GFinitialise function

PriorSpec function

aggregateCovariateInfo

aggregateCovariateInfo function

GFreturnvalue function

PriorSpec.list function

affine.stppp function

MALAlgcpSpatial

MALAlgcpSpatial function

GFupdate.nullFunction

GFupdate.nullFunction function

MALAlgcpSpatioTemporal.PlusPars

MALAlgcpSpatioTemporal.PlusPars function

GPdrv2_Multitype

GPdrv2_Multitype function

MALAlgcpSpatial.PlusPars

MALAlgcpSpatial.PlusPars function

GPlist2array function

MALAlgcpMultitypeSpatial.PlusPars

MALAlgcpMultitypeSpatial.PlusPars function

MALAlgcpAggregateSpatial.PlusPars

MALAlgcpAggregateSpatial.PlusPars function

aggCovInfo.ArealWeightedMean

aggCovInfo.ArealWeightedMean function

RandomFieldsCovFct

RandomFieldsCovFct function

as.fromXYZ.fromFunction

as.fromXYZ.fromFunction function

as.SpatialGridDataFrame

as.SpatialGridDataFrame function

add.list function

K.diff.single function

addTemporalCovariates

addTemporalCovariates function

as.im.fromFunction

as.im.fromFunction function

as.im.fromSPDF function

affine.SpatialPolygonsDataFrame

affine.SpatialPolygonsDataFrame function

GPrealisation function

affine.fromFunction

affine.fromFunction function

SpatialPolygonsDataFrame.stapp

SpatialPolygonsDataFrame.stapp function

MonteCarloAverage

MonteCarloAverage function

affine.fromSPDF

affine.fromSPDF function

bt.scalar function

clearinterp function

as.im.fromXYZ function

checkObsWin function

as.SpatialGridDataFrame.fromXYZ

as.SpatialGridDataFrame.fromXYZ function

as.owinlist function

as.array.lgcpgrid

as.array.lgcpgrid function

as.fromXYZ function

computeGradtruncSpatial

computeGradtruncSpatial function

as.ppp.stppp function

as.stppp.stapp function

as.owinlist.SpatialPolygonsDataFrame

as.owinlist.SpatialPolygonsDataFrame function

constantInTime function

assigninterp function

aggCovInfo.ArealWeightedSum

aggCovInfo.ArealWeightedSum function

as.stppp function

aggCovInfo.Majority

aggCovInfo.Majority function

affine.fromXYZ function

aggregateformulaList

aggregateformulaList function

.onAttach function

as.owinlist.stapp

as.owinlist.stapp function

andrieuthomsh function

as.ppp.mstppp function

constantInTime.numeric

constantInTime.numeric function

blockcircbase function

constantInTime.stppp

constantInTime.stppp function

dump2dir function

constanth function

expectation function

expectation.lgcpPredict

expectation.lgcpPredict function

fftinterpolate.fromSPDF

fftinterpolate.fromSPDF function

as.SpatialPixelsDataFrame

as.SpatialPixelsDataFrame function

autocorrMultitype

autocorrMultitype function

betavals function

computeGradtruncSpatioTemporal

computeGradtruncSpatioTemporal function

condProbs function

exponentialCovFct

exponentialCovFct function

fftgrid function

extract.lgcpPredict

extract.lgcpPredict function

expectation.lgcpPredictSpatialOnlyPlusParameters

expectation.lgcpPredictSpatialOnlyPlusParameters function

as.SpatialPixelsDataFrame.lgcpgrid

as.SpatialPixelsDataFrame.lgcpgrid function

getLHSformulaList

getLHSformulaList function

d.func function

blockcircbaseFunction

blockcircbaseFunction function

gOverlay function

getCellCounts function

density.stppp function

extendspatialAtRisk

extendspatialAtRisk function

genFFTgrid function

g.diff.single function

extract function

getRotation function

grid2spix function

as.list.lgcpgrid

as.list.lgcpgrid function

getinterp function

identify.lgcpPredict

identify.lgcpPredict function

getCounts function

gridav function

grid2spdf function

ginhomAverage function

gridav.lgcpPredict

gridav.lgcpPredict function

identifygrid function

getCovParameters.GPrealisation

getCovParameters.GPrealisation function

fftinterpolate.fromXYZ

interpolate.fromXYZ function

chooseCellwidth

chooseCellwidth function

intens.lgcpPredict

intens.lgcpPredict function

getlgcpPredictSpatialINLA

getlgcpPredictSpatialINLA function

circulant.matrix

circulant.matrix function

as.owin.stapp function

circulant.numeric

circulant.numeric function

cov.interp.fft function

autocorr function

covEffects function

circulant function

intens.lgcpSimMultitypeSpatialPlusParameters

intens.lgcpSimMultitypeSpatialPlusParameters function

eigenfrombase function

etavals function

fftinterpolate function

exceedProbs function

fftinterpolate.fromFunction

fftinterpolate.fromFunction function

getCovParameters.list

getCovParameters.list function

discreteWindow function

generic hasNext method

getCovParameters

getCovParameters function

exceedProbsAggregated

exceedProbsAggregated function

discreteWindow.lgcpPredict

discreteWindow.lgcpPredict function

hasNext.iter function

grid2spoly function

fftmultiply function

formulaList function

getRotation.default

getRotation.default function

iteration number

do we retain this iteration?

lgcpPredictSpatialPlusPars

lgcpPredictSpatialPlusPars function

initialiseAMCMC

initialiseAMCMC function

intens.lgcpSimSpatialPlusParameters

intens.lgcpSimSpatialPlusParameters function

image.lgcpgrid function

getpolyol function

getRotation.stppp

getRotation.stppp function

grid2spts function

interptypes function

guessinterp function

getZmats function

lgcpPredict function

lgcpPredictSpatioTemporalPlusPars

lgcpPredictSpatioTemporalPlusPars function

getZmat function

gridfun function

integerise function

gridfun.lgcpPredict

gridfun.lgcpPredict function

gridInWindow function

lgcpPredictAggregateSpatialPlusPars

lgcpPredictAggregateSpatialPlusPars function

hvals.lgcpPredict

hvals.lgcpPredict function

lgcpPredictMultitypeSpatialPlusPars

lgcpPredictMultitypeSpatialPlusPars function

lgcpPredictAggregated

lgcpPredictAggregated function

initialiseAMCMC.constanth

initaliseAMCMC.constanth function

integerise.mstppp

integerise.mstppp function

initialiseAMCMC.andrieuthomsh

initaliseAMCMC.andrieuthomsh function

lambdaEst function

is this a burn-in iteration?

is.pow2 function

integerise.stppp

integerise.stppp function

lgcpSim function

lgcpPrior function

lambdaEst.ppp function

intens function

lgcpForecast function

lgcpInits function

lgcpSimSpatial function

lgcpSimMultitypeSpatialCovariates

lgcpSimMultitypeSpatialCovariates function

inversebase function

is.SPD function

lgcpPredictSpatial

lgcpPredictSpatial function

lambdaEst.stppp

lambdaEst.stppp function

lgcpgrid.list function

lgcpgrid function

lgcpgrid.array function

matchcovariance

matchcovariance function

mcmctrace function

loc2poly function

lgcpvignette function

lgcpPredictSpatialINLA

lgcpPredictSpatialINLA function

lgcppars function

lgcpSimSpatialCovariates

lgcpSimSpatialCovariates function

maternCovFct15 function

loop over an iterator

my.KinhomAverage

my.KinhomAverage function

mcmctrace.lgcpPredict

mcmctrace.lgcpPredict function

multiply.list function

graphical progress monitor

iterator for MCMC loops

minimum.contrast.spatiotemporal

minimum.contrast.spatiotemporal function

mcmcProgressNone

null progress monitor

lgcpbayes function

mcmcProgressTextBar

text bar progress monitor

lgcpgrid.matrix

lgcpgrid.matrix function

mcmcProgressPrint

printing progress monitor

meanfield function

mstppp function

maternCovFct25 function

meanfield.lgcpPredictINLA

meanfield.lgcpPredictINLA function

meanfield.lgcpPredict

meanfield.lgcpPredict function

mstppp.stppp function

mcmcpars function

mstppp.ppp function

my.ginhomAverage

my.ginhomAverage function

neattable function

mstppp.list function

osppp2merc function

parsummary function

plot.fromSPDF function

minimum.contrast

minimum.contrast function

plot.lgcpZmat function

paramprec function

plotExceed function

osppp2latlon function

numCases function

neigh2D function

plotExceed.array

plotExceed.array function

plot.lgcpQuantiles

plot.lgcpQuantiles function

parautocorr function

plot.lgcpPredict

plot.lgcpPredict function

paramprecbase function

next step of an MCMC chain

plot.stppp function

postcov function

plot.temporalAtRisk

plot.temporalAtRisk function

plotExceed.lgcpPredict

plotExceed.lgcpPredict function

print.temporalAtRisk

print.temporalAtRisk function

postcov.lgcpPredictAggregateSpatialPlusParameters

postcov.lgcpPredictAggregateSpatialPlusParameters function

priorpost function

postcov.lgcpPredictMultitypeSpatialPlusParameters

postcov.lgcpPredictMultitypeSpatialPlusParameters function

postcov.lgcpPredictSpatialOnlyPlusParameters

postcov.lgcpPredictSpatialOnlyPlusParameters function

print.mstppp function

print.mcmc function

rgauss function

plotit function

roteffgain function

plot.lgcpgrid function

plot.fromXYZ function

nullAverage function

nullFunction function

selectObsWindow.stppp

selectObsWindow.stppp function

showGrid.default

showGrid.default function

selectObsWindow.default

selectObsWindow.default function

showGrid function

spatialAtRisk.function

spatialAtRisk.function function

spatialAtRisk.im

spatialAtRisk.im function

plot.lgcpAutocorr

plot.lgcpAutocorr function

stppp.list function

rescale.stppp function

print.stapp function

plot.mstppp function

print.fromFunction

print.fromFunction function

print.lgcpgrid function

print.fromSPDF function

plot.mcmcdiag function

rotmat function

print.stppp function

print.lgcpPredict

print.lgcpPredict function

raster.lgcpgrid

raster.lgcpgrid function

sparsebase function

spatialAtRisk.fromXYZ

spatialAtRisk.fromXYZ function

rescale.mstppp function

segProbs function

spatialAtRisk.default

spatialAtRisk.default function

stapp.list function

smultiply.list function

seintens function

rr.lgcpPredict function

postcov.lgcpPredictSpatioTemporalPlusParameters

postcov.lgcpPredictSpatioTemporalPlusParameters function

stppp.ppp function

spatialAtRisk.SpatialGridDataFrame

spatialAtRisk.SpatialGridDataFrame function

selectObsWindow

selectObsWindow function

seintens.lgcpPredict

seintens.lgcpPredict function

spatialAtRisk function

spatialAtRisk.bivden

spatialAtRisk.bivden function

tempRaster function

summary.lgcpgrid

summary.lgcpgrid function

summary.mcmc function

spatialAtRisk.SpatialPolygonsDataFrame

spatialAtRisk.SpatialPolygonsDataFrame function

print.dump2dir function

temporalAtRisk function

print.fromXYZ function

setoutput function

samplePosterior

samplePosterior function

setTxtProgressBar2

set the progress bar

updateAMCMC function

transblack function

target.and.grad.spatialPlusPars

target.and.grad.spatialPlusPars function

traceplots function

target.and.grad.spatiotemporal

target.and.grad.spatiotemporal function

spatialAtRisk.lgcpgrid

spatialAtRisk.lgcpgrid function

print.gridaverage

print.gridaverage function

quantile.lgcpgrid

quantile.lgcpgrid function

serr.lgcpPredict

serr.lgcpPredict function

quantile.lgcpPredict

quantile.lgcpPredict function

showGrid.lgcpPredict

showGrid.lgcpPredict function

spatialIntensities.fromSPDF

spatialIntensities.fromSPDF function

showGrid.stppp function

spatialIntensities.fromXYZ

spatialIntensities.fromXYZ function

stapp.SpatialPolygonsDataFrame

stapp.SpatialPolygonsDataFrame function

spatialIntensities

spatialIntensities function

spatialparsEst function

target.and.grad.AggregateSpatialPlusPars

target.and.grad.AggregateSpatialPlusPars function

xvals.default function

updateAMCMC.andrieuthomsh

updateAMCMC.andrieuthomsh function

xvals.fromXYZ function

stGPrealisation

stGPrealisation function

target.and.grad.MultitypespatialPlusPars

target.and.grad.MultitypespatialPlusPars function

target.and.grad.SpatioTemporalPlusPars

target.and.grad.SpatioTemporalPlusPars function

temporalAtRisk.function

temporalAtRisk.function function

transred function

temporalAtRisk.numeric

temporalAtRisk.numeric function

txtProgressBar2

A text progress bar with label

varfield function

updateAMCMC.constanth

updateAMCMC.constanth function

toral.cov.mat function

transblue function

varfield.lgcpPredict

varfield.lgcpPredict function

textsummary function

target.and.grad.spatial

target.and.grad.spatial function

thetaEst function

window.lgcpPredict

window.lgcpPredict function

touchingowin function

Population of Welsh counties

transgreen function

xvals.lgcpPredict

xvals.lgcpPredict function

Welsh town details: population

varfield.lgcpPredictINLA

varfield.lgcpPredictINLA function

Welsh town details: location

yvals.fromXYZ function

yvals.SpatialGridDataFrame

yvals.SpatialGridDataFrame function

yvals.default function

yvals.lgcpPredict

yvals.lgcpPredict function

zvals.fromXYZ function

zvals.default function

zvals.SpatialGridDataFrame

zvals.SpatialGridDataFrame function

xvals.SpatialGridDataFrame

xvals.SpatialGridDataFrame function