sample_data

The sample data are subset of a larger longitudinal data set
 from an ongoing large-scale prospective project. There are 13 cluster are
 involved in the sample data.

datasets

For high-dimensional correlated observations, this package carries out the L_1 penalized maximum likelihood
estimation of the precision matrix (network) and the correlation parameters. The correlated data can be
longitudinal data (may be irregularly spaced) with dampening correlation or clustered data with uniform correlation.
For the details of the algorithms, please see the paper Jie Zhou et al. Identifying Microbial Interaction Networks Based on Irregularly Spaced
Longitudinal 16S rRNA sequence data <doi:10.1101/2021.11.26.470159>.

Jie Zhou

lglasso

Longitudinal Graphical Lasso

Jiang Gui

Weston Viles

Anne Hoen

sample_data function

A 100-by-22 matrix<dl class="dl-horizontal">
<dt>Column 1</dt><dd>Cluster id</dd>;
<dt>Column 2</dt><dd>Time points of observations</dd>;
<dt>Columns 3-22</dt><dd>Observations for 20 microbes</dd>.
</dl>

Format

Sample Data — sample_data

A 100-by-22 matrix<dl class='dl-horizontal'>
<dt>Column 1</dt><dd>Cluster id</dd>;
<dt>Column 2</dt><dd>Time points of observations</dd>;
<dt>Columns 3-22</dt><dd>Observations for 20 microbes</dd>.
</dl>

sample_data: Sample Data

Description

Usage

Arguments

Format