lightr (version 1.3)

lr_parse_jaz: Parse OceanInsight converted file

Description

Parse OceanInsight (formerly OceanOptics) converted file. https://www.oceaninsight.com/

Usage

lr_parse_jaz(filename)
lr_parse_jazirrad(filename)

Arguments

filename

Path of the file to parse

Value

A list of two elements:

• a dataframe with columns "wl", "dark", "white", "scope" and "processed", in that order

• a character vector with metadata including:

  • user: Name of the spectrometer operator

  • date: Timestamp of the recording (ISO 8601 format)

  • spec_model: Model of the spectrometer

  • spec_ID: Unique ID of the spectrometer

  • white_inttime: Integration time of the white reference (in ms)

  • dark_inttime: Integration time of the dark reference (in ms)

  • sample_inttime: Integration time of the sample (in ms)

  • white_avgs: Number of averaged measurements for the white reference

  • dark_avgs: Number of averaged measurements for the dark reference

  • sample_avgs: Number of averaged measurements for the sample

  • white_boxcar: Boxcar width for the white reference

  • dark_boxcar: Boxcar width for the dark reference

  • sample_boxcar: Boxcar width for the sample reference

Details

'processed' column computed by official software and provided as is.

Examples

# NOT RUN {
lr_parse_jaz(system.file("testdata", "jazspec.jaz", package = "lightr"))
lr_parse_jazirrad(system.file("testdata", "irrad.JazIrrad",
                  package = "lightr"))

# }