Plot histograms of self-self and self-nonself distances from a distance
matrix calculated by distee() or disteg().
# S3 method for lineupdist
plot(x, breaks = NULL, add.rug = TRUE, what = c("both", "ss", "sn"), ...)None.
Output of distee() or disteg().
Optional vector of breaks, passed to
graphics::hist(), though if it is length 1, we interpret it as
the number of breaks and ensure that both histograms use the same set of
breaks.
If true, also include graphics::rug() below
histograms.
Indicates whether to plot both self-self and self-nonself
distances (or correlations) or just one or the other. ("ss"
indicates self-self and "sn" indicates self-nonself.)
Ignored at this point.
Karl W Broman, broman@wisc.edu
We call pulldiag() and omitdiag() to get the
self-self and self-nonself distances.
If all of the self-self distances are missing, we plot just the self-nonself distances.
pulldiag(), distee(),
plot2dist()
data(expr1, expr2)
expr1 <- expr1[,1:500]
expr2 <- expr2[,1:500]
# distance as correlation
d <- distee(expr1, expr2, "cor")
# plot histograms of self-self and self-nonself correlations
plot(d)
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