linkcomm (version 1.0-11)

plot.OCG: The OCG Plotting Function

Description

This function plots various different OCG graphs.

Usage

# S3 method for OCG
plot(x, type = "", ...)

Arguments

x

An object of class OCG.

type

A character string specifying the type of plot. Can be one of "members" or "graph". See Details below.

…

Additional arguments to be passed to plot.

Value

Plots to the current device.

Details

"members" plots a community membership matrix; "graph" plots a graph layout of the network with coloured link communities. See the OCG plotting function for details of arguments that can be passed to plot.OCG: plotOCGraph, plotLinkCommMembers.

References

Kalinka, A.T. and Tomancak, P. (2011). linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics 27, 2011-2012.

See Also

plotOCGraph, plotLinkCommMembers

Examples

# NOT RUN {
## Generate graph and extract OCG communities.
g <- swiss[,3:4]
oc <- getOCG.clusters(g)

## Plot a graph of OCG clusters.
plot(oc, type = "graph")
# }