check_flevels

internal

Estimates group transmission assortativity coefficients from transmission trees.
Group transmission assortativity coefficients measure the tendency for individuals to transmit
within their own group (e.g. age group, vaccination status, or location) compared to other groups.
The package requires information on who infected whom, group membership for all individuals,
and the relative sizes of each group in the population.
For more details see Geismar et al. (2024) <doi:10.1371/journal.pone.0313037>.

Cyril Geismar

linktree

Estimate Transmission Assortativity Coefficients

check_flevels function

<dl><dt>f</dt>
<dd>A named numeric vector with non-negative values.</dd>
<dt>levels</dt>
<dd>The groups in the data.</dd></dl>

Arguments

Check 'f' levels — check_flevels

<dl>

<dt>f</dt>
<dd>A named numeric vector with non-negative values.</dd>


<dt>levels</dt>
<dd>The groups in the data.</dd>

</dl>

check_flevels: Check 'f' levels

Description

Usage

Arguments