lmQCM v0.2.2


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An Algorithm for Gene Co-Expression Analysis

Implementation based on Zhang, Jie & Huang, Kun (2014) <doi:10.4137/CIN.S14021> Normalized ImQCM: An Algorithm for Detecting Weak Quasi-Cliques in Weighted Graph with Applications in Gene Co-Expression Module Discovery in Cancers. Cancer informatics, 13, CIN-S14021.



To cite this work, please cite our paper on BioRxiv:

TSUNAMI: Translational Bioinformatics Tool Suite For Network Analysis And Mining Zhi Huang, Zhi Han, Tongxin Wang, Wei Shao, Shunian Xiang, Paul Salama, Maher Rizkalla, Kun Huang, Jie Zhang bioRxiv 787507; doi: https://doi.org/10.1101/787507

Functions in lmQCM

Name Description
localMaximumQCM localMaximumQCM: Subroutine for Creating Gene Clusters
merging_lmQCM merging_lmQCM: Subroutine for Merging Gene Clusters
fastFilter fastFilter: Subroutine for filtering expression matrix
lmQCM lmQCM: Main Routine for Gene Co-expression Analysis
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Type Package
Date 2021-01-13
License MIT + file LICENSE
Encoding UTF-8
LazyData true
RoxygenNote 7.1.1
URL https://github.com/huangzhii/lmQCM/
BugReports https://github.com/huangzhii/lmQCM/issues/
NeedsCompilation no
Packaged 2021-01-13 19:10:40 UTC; zhihuan
Repository CRAN
Date/Publication 2021-01-14 00:10:02 UTC

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