lmQCM v0.2.2
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An Algorithm for Gene Co-Expression Analysis
Implementation based on Zhang, Jie & Huang, Kun (2014) <doi:10.4137/CIN.S14021> Normalized ImQCM: An Algorithm for Detecting Weak Quasi-Cliques in Weighted Graph with Applications in Gene Co-Expression Module Discovery in Cancers. Cancer informatics, 13, CIN-S14021.
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lmQCM
To cite this work, please cite our paper on BioRxiv:
TSUNAMI: Translational Bioinformatics Tool Suite For Network Analysis And Mining Zhi Huang, Zhi Han, Tongxin Wang, Wei Shao, Shunian Xiang, Paul Salama, Maher Rizkalla, Kun Huang, Jie Zhang bioRxiv 787507; doi: https://doi.org/10.1101/787507
Functions in lmQCM
| Name | Description | |
| localMaximumQCM | localMaximumQCM: Subroutine for Creating Gene Clusters | |
| merging_lmQCM | merging_lmQCM: Subroutine for Merging Gene Clusters | |
| fastFilter | fastFilter: Subroutine for filtering expression matrix | |
| lmQCM | lmQCM: Main Routine for Gene Co-expression Analysis | |
| No Results! | ||
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Details
| Type | Package |
| Date | 2021-01-13 |
| License | MIT + file LICENSE |
| Encoding | UTF-8 |
| LazyData | true |
| RoxygenNote | 7.1.1 |
| URL | https://github.com/huangzhii/lmQCM/ |
| BugReports | https://github.com/huangzhii/lmQCM/issues/ |
| NeedsCompilation | no |
| Packaged | 2021-01-13 19:10:40 UTC; zhihuan |
| Repository | CRAN |
| Date/Publication | 2021-01-14 00:10:02 UTC |
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