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lme4 (version 1.0-6)

Linear mixed-effects models using Eigen and S4

Description

Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the Eigen C++ library for numerical linear algebra and RcppEigen "glue".

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install.packages('lme4')

Monthly Downloads

376,257

Version

1.0-6

License

GPL (>= 2)

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Maintainer

Ben Bolker

Last Published

February 2nd, 2014

Functions in lme4 (1.0-6)

confint.merMod

Compute confidence intervals on the parameters of an lme4 fit
cake

Breakage angle of chocolate cakes
fortify

add information to data based on a fitted model
nlformula

Manipulate a nonlinear model formula.
isNested

Is f1 nested within f2?
refitML

Refit a model by maximum likelihood criterion
GQdk

Sparse Gaussian Quadrature grid
devcomp

Extract the deviance component list
sigma

Extract residual standard error
fixef

Extract fixed-effects estimates
splom.thpr

Profile pairs plot
lmer

Fit Linear Mixed-Effects Models
findbars

Determine random-effects expressions from a formula
mkdevfun

Create a deviance evaluation function from a predictor and a response module
plot.merMod

diagnostic plots for merMod fits
lmList

List of lm Objects with a Common Model
pvalues

Getting p-values for fitted models
rePos-class

Class "rePos"
VarCorr

Extract Variance and Correlation Components
lme4-package

Linear, generalized linear, and nonlinear mixed models
grouseticks

Data on red grouse ticks from Elston et al. 2001
merMod-class

Class "merMod" of Fitted Mixed-Effect Models
densityplot.thpr

densityplot from a mixed-effects profile
glmer.nb

glmer() for Negative Binomial
nlmer

Fit Nonlinear Mixed-Effects Models
GQN

Sparse Gauss-Hermite quadrature grids
GHrule

Univariate Gauss-Hermite quadrature rule
simulate.merMod

Simulate responses from a merMod object
glmer

Fit Generalized Linear Mixed-Effects Models
glmFamily-class

mkVarCorr

Make Variance and Correlation Matrices from theta
lmList-class

Class "lmList" of 'lm' Objects on Common Model
Dyestuff

Yield of dyestuff by batch
nobars

Omit terms separated by vertical bars in a formula
modular

Modular functions for mixed model fits
mkRespMod

Create an lmerResp, glmResp or nlsResp instance
subbars

"Sub[stitute] Bars"
NelderMead-class

Class "NelderMead"
Pastes

Paste strength by batch and cask
mkMerMod

Create a merMod object
merPredD

Generator object for the merPredD class
rePos

Generator object for the rePos (random-effects positions) class
refit

Refit a model with a new response, by maximum likelihood criterion
NelderMead

Generator object for the Nelder-Mead optimizer class.
InstEval

University Lecture/Instructor Evaluations by Students at ETH
sleepstudy

Reaction times in a sleep deprivation study
isREML

Check characteristics of models
residuals.merMod

residuals of merMod objects
varianceProf

Transform to the variance scale
golden-class

Class "golden"
predict.merMod

Predictions from a model at new data values
glmFamily

Generator object for the glmFamily class
bootMer

Model-based (Semi-)Parametric Bootstrap for Mixed Models
VerbAgg

Verbal Aggression item responses
getME

Extract or Get Generalized Components from a Fitted Mixed Effects Model
profile-methods

Profile method for merMod objects
cbpp

Contagious bovine pleuropneumonia
golden

Generator object for the golden search optimizer class.
Penicillin

Variation in penicillin testing
lmerControl

Control of Mixed Model Fitting
lmResp-class

Classes "lmResp", "glmResp", "nlsResp" and "lmerResp"
mkReTrms

Create Z, Lambda, Lind, etc.
merPredD-class

Class "merPredD" - a dense predictor reference class
ranef

Extract the modes of the random effects
lmResp

Generator objects for the response classes