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lmem.gwaser (version 0.1.0)

Linear Mixed Effects Models for Genome-Wide Association Studies

Description

Performs Genome-Wide Association analysis for diverse populations and for multi-environment and multi-trait analysis using linear mixed models.

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Version

Install

install.packages('lmem.gwaser')

Monthly Downloads

5

Version

0.1.0

License

GPL-3

Maintainer

Gaston Quero

Last Published

May 6th, 2016

Functions in lmem.gwaser (0.1.0)

gwas.cross

Read genomic data to perform GWAS analyses.
QA_geno

Name of the file containing genotypic (marker scores) information.
gwas.analysis

Performs GWAS analysis with five optional models and different optional thresholds.
linkdis.plots

Linkage Disequilibrium heatmap plot
pca.analysis

Principal Component Analysis.
QA_map

Name of the file containing marker map information
QA_sim

Name of the file containing phenotypic information
mq.g.diagnostics

Performs molecular markers quality diagnostics.
QA_pheno

Name of the file containing phenotypic information