lmms-class


<code>lmms</code> class is a superclass for classes <code>lmmspline</code>  and <code>lmmsde</code>. These classes inherit common slots.


Linear Mixed effect Model Splines ('lmms') implements linear mixed
effect model splines for modelling and differential expression for highly
dimensional data sets: investNoise() for quality control and filterNoise() for
removing non-informative trajectories; lmmSpline() to model time course expression
profiles and lmmsDE() performs differential expression analysis to identify
differential expression between groups, time and/or group x time interaction.

Jasmin Straube

lmms

Linear Mixed Effect Model Splines for Modelling and Analysis of
Time Course Data

lmms-class function

 <dl>
<dt><code>basis</code></dt><dd>An object of class <code>character</code> describing the basis used for modelling.</dd> <dt><code>knots</code></dt><dd>An object of class <code>numeric</code>, describing the boundaries of the splines. If not defined or if basis='cubic' knots are automatically estimated using Ruppert 2002 or are the design points when using 'cubic'.</dd> <dt><code>errorMolecules</code></dt><dd>Vector of class <code>character</code>, describing the molecules that could not be modelled.</dd> </dl>

lmms-class: `lmms` class a S4 superclass to extend `lmmspline` and `lmmsde` class.

Description

Arguments

Slots