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lncDIFF

lncDIFF is an R package for long non-coding RNA (lncRNA) differential expression analysis, using generalized linear model with zero-inflated exponential quasi likelihood.

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Version

Install

install.packages('lncDIFF')

Monthly Downloads

165

Version

1.0.0

License

GPL (>= 2)

Maintainer

Qian Li

Last Published

January 13th, 2020

Functions in lncDIFF (1.0.0)

LRT

Likelihood ratio test based on ZIQML.fit()
ZIQML.fit

Group and covariate effects on lncRNA counts by Generalized Linear Model
hnsc.edata

lncRNA Fragments Per Killobase per Million (FPKM) in a head and neck squamous cell carcinomas (hnsc) study.
lncDIFF

lncRNA Differential Expression (DE) analysis
tissue

Tissue type for samples in hnsc.edata.
cov

Batch information for samples in hnsc.edata.
design

Design matrix for samples in hnsc.edata.