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loadings (version 0.5.1)

antibiotic: Metagenome and metabolome data from antibiotic-treated mouse feces.

Description

This is metagenome and metabolome data of antibiotic-treated mouse fecal samples [Y. Wakita, et al, BMC Microbiology, 18:188 (2018)]. This dataset includes six groups, comprising three types (Clea, CR, and Slc) of control mice and their antibiotic-treated counterparts.

Usage

data(antibiotic)

Arguments

Format

The list object "antibiotic" contains the following elements:

data$X$microbiome$dist: Weighted UniFrac distance matrix for the metagenome.

data$X$microbiome$comp: Composition data for the metagenome.

data$X$metabolome : Metabolome data.

data$Y: A dummy matrix that includes group information with 0 or 1 in each column.

annotation$metabolome : Compound annotation for metabolome data.