CharSequences2ScoreSequences

Convert several character sequence into score sequences. For only one sequence see CharSequence2ScoreSequence() function.

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

David Robelin

localScore

Package for Sequence Analysis by Local Score

Sebastian Simon

Sabine Mercier

Sebastien Dejean

The authors of Eigen the library for the included version of Eigen 

CharSequences2ScoreSequences function

<dl><dt>sequences</dt>
<dd>a list of character sequences</dd>
<dt>dictionary</dt>
<dd>a dictionary</dd></dl>

Arguments

Convert several character sequences into score sequences — CharSequences2ScoreSequences

<dl>

<dt>sequences</dt>
<dd>a list of character sequences</dd>


<dt>dictionary</dt>
<dd>a dictionary</dd>

</dl>

CharSequences2ScoreSequences: Convert several character sequences into score sequences

Description

Usage

Value

Arguments

Examples