loadScoreFromFile

Reads a csv file with 2-3 columns and returns it as a list object of vectors, with names corresponding to the first column of the file. For details view section "File Formats" in vignette.

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

David Robelin

localScore

Package for Sequence Analysis by Local Score

Sebastian Simon

Sabine Mercier

Sebastien Dejean

The authors of Eigen the library for the included version of Eigen 

loadScoreFromFile function

<dl><dt>filepath</dt>
<dd>optional: location of file on disk. If not provided, a file picker dialog will be opened.</dd>
<dt>...</dt>
<dd>optional: use arguments from read.csv</dd></dl>

Arguments

Load score from file — loadScoreFromFile

<dl>

<dt>filepath</dt>
<dd>optional: location of file on disk. If not provided, a file picker dialog will be opened.</dd>


<dt>...</dt>
<dd>optional: use arguments from read.csv</dd>

</dl>

loadScoreFromFile: Load score from file

Description

Usage

Value

Arguments