scoreDictionnary2probabilityVector

Get extremes scores, then create a complete list and set a probability equal to zeros for not present scores

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

David Robelin

localScore

Package for Sequence Analysis by Local Score

Sebastian Simon

Sabine Mercier

Sebastien Dejean

The authors of Eigen the library for the included version of Eigen 

scoreDictionnary2probabilityVector function

<dl><dt>list</dt>
<dd>vector of scores</dd>
<dt>score_extremes</dt>
<dd>vector of probability</dd></dl>

Arguments

Check for missing scores values in the score distribution — scoreDictionnary2probabilityVector

<dl>

<dt>list</dt>
<dd>vector of scores</dd>


<dt>score_extremes</dt>
<dd>vector of probability</dd>

</dl>

scoreDictionnary2probabilityVector: Check for missing scores values in the score distribution

Description

Usage

Value

Arguments

Examples