stationary_distribution

Calculates stationary distribution of markov transition matrix by use of eigenvectors of length 1

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

David Robelin

localScore

Package for Sequence Analysis by Local Score

Sebastian Simon

Sabine Mercier

Sebastien Dejean

The authors of Eigen the library for the included version of Eigen 

stationary_distribution function

<dl><dt>m</dt>
<dd>Transition Matrix [matrix object]</dd></dl>

Arguments

Stationary distribution [Markov chains] — stationary_distribution

<dl>

<dt>m</dt>
<dd>Transition Matrix [matrix object]</dd>

</dl>

stationary_distribution: Stationary distribution [Markov chains]

Description

Usage

Value

Arguments

Examples