localScore (version 1.0.6)

LongSeq: Long protein sequence

Description

A long protein sequence.

Usage

LongSeq

Arguments

Format

A character string with 1093 characters corresponding to Q60519.fasta in UniProt Data base.

Examples

Run this code
# NOT RUN {
data(LongSeq)
LongSeq
nchar(LongSeq)
data(dico)
LongSeqScore=CharSequence2ScoreSequence(LongSeq,dico)
LongSeqScore[1:50]
localScoreC(LongSeqScore)$localScore
LS=localScoreC(LongSeqScore)$localScore[1]
prob1 = scoreSequences2probabilityVector(list(LongSeqScore))
daudin(localScore = LS, sequence_length = nchar(LongSeq),
               score_probabilities = prob1,
               sequence_min = min(LongSeqScore),
               sequence_max = max(LongSeqScore))
karlin(localScore = LS, sequence_length = nchar(LongSeq),
score_probabilities = prob1,
sequence_min = min(LongSeqScore),
sequence_max = max(LongSeqScore))
# }

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