sequences2transmatrix: Transition matrix from sequence(s)
Description
Calculates the transition matrix by counting occurences of tuples in given vector list
Usage
sequences2transmatrix(sequences)
Arguments
sequences
Sequences to be analyzed, as list of numeric vectors
Value
A list object containing
Transition Matrix
Transition Matrix
Min Value
minimal score found in supplied sequences
Max Value
maximal score found in supplied sequences
Details
The transition matrix will be structured so that the lowest score corresponds to the first column and row
and the highest score corresponds to the last column and row. Note that the resulting matrix is not stochastic because it can occur rows filled up with only 0 for not observed score in Min Value Max Value interval.