SLE_gwas_sub

<p>Dataset of SNPs at 3 gene loci (UBE2L3, STAT4, IRF5) from GWAS on SLE
(Bentham et al, 2015, Nature Genetics 47(12):1457-64, PMID: 26502338).</p>

datasets

Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots <doi:10.1093/bioadv/vbaf006>.

Myles Lewis

locuszoomr

Gene Locus Plot with Gene Annotations

SLE_gwas_sub function

<p>Data frame with 1990 rows and 11 variables</p>

SLE_gwas_sub: SLE GWAS data subset

Description

Usage

Arguments

Format