loose.rock (version 1.2.0)

coding.genes: Retrive coding genes from known databases

Description

It retrieves from NCBI and ensembl

Usage

coding.genes(verbose = TRUE, useCache = TRUE, extra.verbose = FALSE)

Arguments

verbose

show messages with number of genes retrieved

useCache

Boolean indicating whether the results cache should be used. Setting to FALSE will disable reading and writing of the cache. This argument is likely to disappear after the cache functionality has been tested more thoroughly.

extra.verbose

This will make all function calls verbose, which could be a lot of information.

Value

a table with gene information

Examples

# NOT RUN {
# This can take a few minutes depending on the connection
# }
# NOT RUN {
  res <- coding.genes()
  nrow(res)
  head(res)
# }