loose.rock (version 1.2.0)

join.ensembl.and.ccds: Join genes from ensembl and ccds in a single table

Description

[INTERNAL] Finds the ensembl ids of genes from ccds

Usage

join.ensembl.and.ccds(
  ensembl.genes,
  ccds.genes,
  mart,
  useCache = TRUE,
  verbose = FALSE
)

Arguments

ensembl.genes

protein coding genes from ensembl

ccds.genes

protein coding genes from ccds

mart

biomaRt dataset to use

useCache

should biomart use cache

verbose

show extra messages

Value

table with ensembl_gene_id and external_gene_name columns