lumi (version 2.24.0)

lumiMethyStatus: Estimate the methylation status of individual methylation sites

Description

Estimate the methylation status of individual methylation sites by fitting a two component Gamma mixture model for each sample

Usage

lumiMethyStatus(methyLumiM, ...)

Arguments

methyLumiM

a MethyLumiM class object

...

Other parameters used by methylationCall

Value

Details

This function calls methylationCall and returns the methylation status of individual methylation sites. The methylation status includes: "Unmethy" (unmethylation probability > unmethylation threshold), "Methy" (methylation probability > methylation threshold), or "Margin". The methylation probability is returned as an attribute of "probability".

See Also

See Also methylationCall and gammaFitEM

Examples

data(example.lumiMethy)
methyCall <- lumiMethyStatus(example.lumiMethy)
head(methyCall)